MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.5 nTPM
HPA Brain:22.1 nTPM
GTEx:18.5 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:20.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2019 Male, age 18, unknown 21.2
1827 Male, age 72, unknown 20.8
2666 Male, age 74, left hemisphere 18.9
1833 Male, age 53, unknown 18.2
1830 Male, age 51, unknown 18.1
1870 Female, age 42, unknown 17.8
2219 Male, age 76, both hemispheres 17.6
2411 Female, age 72, unknown 17.1
2828 Female, age 72, unknown 15.8
2586 Male, age 75, left hemisphere 13.5
Dorsal raphe nucleus
nTPM: 17.7
2750 Male, age 76, both hemispheres 19.8
1828 Male, age 53, unknown 19.2
2298 Female, age 72, unknown 18.8
2047 Male, age 72, unknown 16.2
2016 Female, age 72, unknown 14.5
Inferior colliculus
nTPM: 18.3
2097 Female, age 72, unknown 19.7
2849 Male, age 72, unknown 19.2
1890 Male, age 53, unknown 17.3
1848 Female, age 42, unknown 16.9
Median raphe nucleus
nTPM: 22.1
2220 Male, age 76, midline 22.1
Periaquaductal grey, anterior
nTPM: 18.3
1947 Male, age 18, unknown 19.3
2502 Female, age 75, unknown 18.4
1795 Male, age 51, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 19.0
1831 Male, age 72, unknown 18.9
2464 Female, age 72, unknown 18.0
1840 Male, age 53, unknown 16.4
Periaquaductal grey, lateral
nTPM: 16.6
2272 Male, age 74, both hemispheres 17.2
2140 Male, age 76, both hemispheres 16.4
2053 Male, age 18, unknown 16.2
Pretectal area
nTPM: 21.1
1816 Male, age 51, unknown 25.6
1817 Female, age 42, unknown 25.0
1944 Female, age 72, unknown 23.8
2007 Male, age 72, unknown 22.8
1815 Male, age 53, unknown 21.9
2407 Male, age 75, both hemispheres 21.2
2667 Female, age 75, unknown 20.4
2273 Male, age 74, both hemispheres 18.7
2224 Female, age 72, unknown 18.6
2825 Male, age 18, unknown 17.5
2316 Male, age 76, right hemisphere 16.4
Red nucleus
nTPM: 18.5
2725 Female, age 75, unknown 24.7
2584 Male, age 75, left hemisphere 20.1
2785 Male, age 18, unknown 19.7
2823 Male, age 76, right hemisphere 19.7
1821 Female, age 72, unknown 18.9
1904 Male, age 53, unknown 18.3
1865 Male, age 51, unknown 18.2
1954 Female, age 42, unknown 17.6
2769 Male, age 72, unknown 16.9
2588 Male, age 74, left hemisphere 16.4
2227 Male, age 72, unknown 16.0
2503 Female, age 72, unknown 15.9
Substantia nigra
nTPM: 20.9
2409 Female, age 72, unknown 27.2
1941 Male, age 53, unknown 24.2
1889 Female, age 72, unknown 23.8
1916 Female, age 42, unknown 23.2
2241 Male, age 72, unknown 20.9
2665 Male, age 74, both hemispheres 20.4
1851 Male, age 51, unknown 19.0
2583 Male, age 75, right hemisphere 18.3
2699 Male, age 18, unknown 16.3
2590 Female, age 75, unknown 15.7
Superior colliculus
nTPM: 18.2
2087 Female, age 72, unknown 21.4
2261 Male, age 18, unknown 20.7
1895 Male, age 76, right hemisphere 20.5
1796 Male, age 53, unknown 18.8
2668 Female, age 75, unknown 17.9
1913 Female, age 42, unknown 17.6
1839 Male, age 51, unknown 17.3
1995 Male, age 72, unknown 17.2
2587 Male, age 74, left hemisphere 16.4
2664 Male, age 75, both hemispheres 14.1
Ventral tegmental area
nTPM: 16.9
2218 Male, age 76, both hemispheres 19.2
2410 Female, age 72, unknown 18.0
1915 Female, age 42, unknown 17.2
2223 Female, age 72, unknown 17.1
1942 Male, age 51, unknown 16.5
2021 Male, age 53, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.5
Samples: 139

Max nTPM: 40.3
Min nTPM: 10.2
Std nTPM: 4.6
Median nTPM: 17.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 27.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 26.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 25.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.0
FF:10158-103A5 76 years, female 70.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.3
Samples: 4

Max nTPM: 17.5
Min nTPM: 9.0
Sample A Female 17.5
Sample B Female 12.3
Sample C Male 14.5
Sample D Male 9.0
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 14.1
Sample C Male 18.0
Sample D Male 16.6
Periaqueductal gray
nTPM: 12.4
Samples: 3

Max nTPM: 13.9
Min nTPM: 11.1
Sample B Female 12.3
Sample C Male 13.9
Sample D Male 11.1
Superior colliculi
nTPM: 16.8
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.2
Sample A Female 17.9
Sample B Female 14.2
Sample C Male 19.2
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 21.8
Min nTPM: 20.2
Sample A Male 20.5
Sample B Male 20.9
Sample C Female 21.8
Sample D Female 20.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68191306 Antisense, RP_041123_02_C10, Mouse strain C57BL/6J (56 days, male) 0.5

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