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                                  • PIGX
                                  TISSUE PRIMARY DATA AMYGDALA Show tissue menu
                                  ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
                                  ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
                                  ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
                                  SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Dictionary
                                  Tissue proteome
                                  Amygdala
                                  AMYGDALA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  Consensus:17.1 nTPM
                                  HPA Brain:17.6 nTPM
                                  GTEx:17.1 nTPM
                                  FANTOM5:39.0 Scaled Tags Per Million
                                  Pig:5.8 nTPM
                                  Mouse:20.6 nTPM

                                  AMYGDALA - HPA Brain RNA-seq
                                  Max nTPM 17.6
                                  Sample id Sample description nTPM
                                  Amygdala
                                  nTPM: 17.6
                                  1987 Female, age 91, left hemisphere 20.6
                                  2814 Male, age 76, right hemisphere 19.4
                                  2517 Female, age 94, left hemisphere 17.4
                                  2514 Male, age 75, right hemisphere 16.2
                                  2695 Female, age 67, right hemisphere 14.7
                                  Basal amygdala
                                  nTPM: 15.0
                                  2609 Male, age 75, right hemisphere 19.5
                                  2243 Female, age 91, right hemisphere 15.7
                                  1955 Male, age 76, both hemispheres 15.6
                                  2685 Female, age 94, left hemisphere 15.4
                                  2110 Male, age 80, left hemisphere 13.7
                                  2827 Female, age 67, right hemisphere 9.8
                                  Central amygdala
                                  nTPM: 17.4
                                  1905 Male, age 76, both hemispheres 20.0
                                  2515 Male, age 75, right hemisphere 18.6
                                  2826 Female, age 94, left hemisphere 17.8
                                  2239 Male, age 80, left hemisphere 15.5
                                  2701 Female, age 91, right hemisphere 15.3
                                  Corticomedial amygdala
                                  nTPM: 15.0
                                  2428 Male, age 75, right hemisphere 18.5
                                  2242 Female, age 91, right hemisphere 16.8
                                  2829 Male, age 80, left hemisphere 15.4
                                  2429 Female, age 94, left hemisphere 14.2
                                  2240 Male, age 76, both hemispheres 13.9
                                  2535 Female, age 67, right hemisphere 11.3
                                  Lateral amygdala
                                  nTPM: 15.4
                                  2516 Male, age 75, right hemisphere 19.2
                                  1883 Male, age 76, both hemispheres 17.9
                                  2256 Male, age 80, left hemisphere 14.8
                                  2255 Female, age 91, right hemisphere 14.6
                                  2830 Female, age 67, right hemisphere 13.2
                                  2534 Female, age 94, left hemisphere 12.6

                                  AMYGDALA - GTEx RNA-seqi

                                  RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                  Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 17.1
                                  GTEx sample id Sample description nTPM
                                  14.516.519.610.126.905101520253035
                                  14.516.519.610.126.905101520253035
                                  Brain - Amygdala
                                  Average nTPM: 17.1
                                  Samples: 152

                                  Max nTPM: 36.7
                                  Min nTPM: 3.5
                                  Std nTPM: 3.9
                                  Median nTPM: 16.5
                                  GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 36.7
                                  GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 26.9
                                  GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 25.9
                                  GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 25.7
                                  GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 24.9
                                  GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 24.8
                                  GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 24.5
                                  GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.2
                                  GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 23.6
                                  GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 23.4
                                  GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 23.2
                                  GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 23.1
                                  GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 22.8
                                  GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 22.8
                                  GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 22.3
                                  GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 21.6
                                  GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.5
                                  GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 21.4
                                  GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 21.3
                                  GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 21.2
                                  GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 21.2
                                  GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 21.1
                                  GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 20.8
                                  GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 20.8
                                  GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 20.6
                                  GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 20.4
                                  GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 20.3
                                  GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 20.3
                                  GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 20.1
                                  GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 20.1
                                  GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 20.0
                                  GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 20.0
                                  GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 20.0
                                  GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 19.9
                                  GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 19.8
                                  GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 19.8
                                  GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 19.7
                                  GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 19.7
                                  GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 19.6
                                  GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 19.5
                                  GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.5
                                  GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 19.2
                                  GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 19.2
                                  GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 19.0
                                  GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 18.9
                                  GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 18.8
                                  GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 18.8
                                  GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 18.8
                                  GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 18.5
                                  GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 18.4
                                  GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 18.4
                                  GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 18.2
                                  GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 18.2
                                  GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 18.1
                                  GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 18.1
                                  GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 18.0
                                  GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 18.0
                                  GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 17.8
                                  GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 17.7
                                  GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 17.7
                                  GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 17.6
                                  GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 17.5
                                  GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 17.5
                                  GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 17.5
                                  GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 17.4
                                  GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 17.3
                                  GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 17.2
                                  GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 17.0
                                  GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 17.0
                                  GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 16.9
                                  GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 16.7
                                  GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 16.7
                                  GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 16.6
                                  GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 16.6
                                  GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 16.5
                                  GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 16.5
                                  GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 16.5
                                  GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 16.4
                                  GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 16.3
                                  GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 16.3
                                  GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 16.3
                                  GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 16.2
                                  GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 16.2
                                  GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 16.2
                                  GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 16.1
                                  GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 16.0
                                  GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 16.0
                                  GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 16.0
                                  GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 15.8
                                  GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 15.8
                                  GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 15.8
                                  GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 15.7
                                  GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 15.7
                                  GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 15.6
                                  GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 15.5
                                  GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 15.5
                                  GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 15.5
                                  GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 15.5
                                  GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 15.4
                                  GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 15.4
                                  GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 15.3
                                  GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 15.2
                                  GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15.1
                                  GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 15.0
                                  GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 14.8
                                  GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 14.8
                                  GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 14.8
                                  GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 14.8
                                  GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 14.8
                                  GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 14.7
                                  GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 14.7
                                  GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 14.7
                                  GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 14.6
                                  GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14.5
                                  GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 14.5
                                  GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 14.5
                                  GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 14.4
                                  GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 14.3
                                  GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 14.3
                                  GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 14.2
                                  GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 14.1
                                  GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 14.1
                                  GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 13.9
                                  GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 13.9
                                  GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 13.9
                                  GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 13.8
                                  GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.7
                                  GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 13.6
                                  GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 13.6
                                  GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 13.6
                                  GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 13.5
                                  GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 13.5
                                  GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 13.5
                                  GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 13.4
                                  GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 13.4
                                  GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 13.2
                                  GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 12.9
                                  GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 12.9
                                  GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 12.8
                                  GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 12.6
                                  GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 12.6
                                  GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 12.5
                                  GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 12.5
                                  GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 12.5
                                  GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 12.4
                                  GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 12.3
                                  GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 12.3
                                  GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 11.6
                                  GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 11.6
                                  GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 10.4
                                  GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 10.1
                                  GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.5
                                  Show allShow less

                                  AMYGDALA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 39.0
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Amygdala
                                  Scaled Tags Per Million: 39.0
                                  FF:10151-102I7 76 years, female 39.0

                                  AMYGDALA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 5.8
                                  Pig sample Sample description nTPM
                                  5.65.86.05.46.00.00.51.01.52.02.53.03.54.04.55.05.56.0
                                  5.65.86.05.46.00.00.51.01.52.02.53.03.54.04.55.05.56.0
                                  Amygdala
                                  nTPM: 5.8
                                  Samples: 4

                                  Max nTPM: 6.0
                                  Min nTPM: 5.4
                                  Sample A Female 5.4
                                  Sample B Female 6.0
                                  Sample C Male 5.7
                                  Sample D Male 6.0

                                  AMYGDALA - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 20.6
                                  Mouse sample Sample description nTPM
                                  19.721.021.917.922.70246810121416182022
                                  19.721.021.917.922.70246810121416182022
                                  Amygdala
                                  nTPM: 20.7
                                  Samples: 4

                                  Max nTPM: 22.7
                                  Min nTPM: 17.9
                                  Sample A Male 20.3
                                  Sample B Male 22.7
                                  Sample C Female 17.9
                                  Sample D Female 21.7

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                                  The Human Protein Atlas

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                                  The Human Protein Atlas project is funded
                                  by the Knut & Alice Wallenberg Foundation.


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