MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:47.0 nTPM
GTEx:28.0 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:67.5 nTPM
Mouse:46.9 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
1870 Female, age 42, unknown 40.5
2411 Female, age 72, unknown 37.7
1833 Male, age 53, unknown 36.1
2019 Male, age 18, unknown 33.9
1830 Male, age 51, unknown 33.8
1827 Male, age 72, unknown 33.1
2666 Male, age 74, left hemisphere 32.1
2219 Male, age 76, both hemispheres 31.8
2828 Female, age 72, unknown 27.8
2586 Male, age 75, left hemisphere 23.3
Dorsal raphe nucleus
nTPM: 39.8
2298 Female, age 72, unknown 40.6
1828 Male, age 53, unknown 40.5
2047 Male, age 72, unknown 39.5
2750 Male, age 76, both hemispheres 39.5
2016 Female, age 72, unknown 39.1
Inferior colliculus
nTPM: 34.7
2097 Female, age 72, unknown 37.6
1848 Female, age 42, unknown 34.7
2849 Male, age 72, unknown 33.7
1890 Male, age 53, unknown 32.8
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Periaquaductal grey, anterior
nTPM: 40.7
2502 Female, age 75, unknown 44.5
1947 Male, age 18, unknown 44.4
1795 Male, age 51, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 38.9
1840 Male, age 53, unknown 41.7
2850 Male, age 76, both hemispheres 40.8
2464 Female, age 72, unknown 36.9
1831 Male, age 72, unknown 36.3
Periaquaductal grey, lateral
nTPM: 34.3
2140 Male, age 76, both hemispheres 35.6
2053 Male, age 18, unknown 35.2
2272 Male, age 74, both hemispheres 32.1
Pretectal area
nTPM: 36.1
2224 Female, age 72, unknown 43.9
2273 Male, age 74, both hemispheres 40.2
1944 Female, age 72, unknown 38.3
2825 Male, age 18, unknown 37.3
1817 Female, age 42, unknown 36.9
1816 Male, age 51, unknown 36.3
1815 Male, age 53, unknown 35.2
2007 Male, age 72, unknown 33.9
2316 Male, age 76, right hemisphere 33.1
2667 Female, age 75, unknown 31.9
2407 Male, age 75, both hemispheres 30.0
Red nucleus
nTPM: 33.2
1821 Female, age 72, unknown 43.7
2725 Female, age 75, unknown 37.4
2588 Male, age 74, left hemisphere 37.0
1954 Female, age 42, unknown 35.5
2503 Female, age 72, unknown 33.1
2823 Male, age 76, right hemisphere 32.0
1904 Male, age 53, unknown 31.6
1865 Male, age 51, unknown 31.1
2227 Male, age 72, unknown 30.7
2769 Male, age 72, unknown 29.7
2584 Male, age 75, left hemisphere 28.9
2785 Male, age 18, unknown 27.3
Substantia nigra
nTPM: 38.5
2241 Male, age 72, unknown 59.8
1916 Female, age 42, unknown 44.2
2409 Female, age 72, unknown 42.1
1851 Male, age 51, unknown 40.3
1889 Female, age 72, unknown 37.3
1941 Male, age 53, unknown 37.3
2699 Male, age 18, unknown 35.5
2590 Female, age 75, unknown 33.3
2665 Male, age 74, both hemispheres 30.8
2583 Male, age 75, right hemisphere 24.8
Superior colliculus
nTPM: 33.0
1839 Male, age 51, unknown 37.6
2587 Male, age 74, left hemisphere 37.5
1895 Male, age 76, right hemisphere 36.2
2261 Male, age 18, unknown 34.4
2668 Female, age 75, unknown 33.3
1913 Female, age 42, unknown 32.3
2087 Female, age 72, unknown 31.3
1796 Male, age 53, unknown 30.2
2664 Male, age 75, both hemispheres 28.6
1995 Male, age 72, unknown 28.3
Ventral tegmental area
nTPM: 40.9
1915 Female, age 42, unknown 44.8
2021 Male, age 53, unknown 41.7
1942 Male, age 51, unknown 41.0
2223 Female, age 72, unknown 39.6
2218 Male, age 76, both hemispheres 39.5
2410 Female, age 72, unknown 38.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 47.2
Min nTPM: 17.2
Std nTPM: 5.5
Median nTPM: 27.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 47.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 42.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 41.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 39.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 38.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 38.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 37.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.6
FF:10158-103A5 76 years, female 82.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.5
Samples: 4

Max nTPM: 88.7
Min nTPM: 48.4
Sample A Female 88.7
Sample B Female 60.0
Sample C Male 72.7
Sample D Male 48.4
Midbrain
nTPM: 65.9
Samples: 4

Max nTPM: 72.3
Min nTPM: 57.1
Sample A Female 72.3
Sample B Female 68.2
Sample C Male 66.1
Sample D Male 57.1
Periaqueductal gray
nTPM: 57.4
Samples: 3

Max nTPM: 65.5
Min nTPM: 50.4
Sample B Female 56.2
Sample C Male 65.5
Sample D Male 50.4
Superior colliculi
nTPM: 67.1
Samples: 4

Max nTPM: 81.0
Min nTPM: 58.8
Sample A Female 81.0
Sample B Female 62.2
Sample C Male 66.4
Sample D Male 58.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 49.1
Min nTPM: 44.6
Sample A Male 44.6
Sample B Male 46.6
Sample C Female 49.1
Sample D Female 47.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
74882697 Antisense, RP_060315_04_G03, Mouse strain C57BL/6J (56 days, male) 4.6
69783059 Antisense, RP_050505_04_C08, Mouse strain C57BL/6J (56 days, male) 2.4

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