MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:20.5 nTPM
GTEx:11.1 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:28.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.6
2586 Male, age 75, left hemisphere 26.8
2019 Male, age 18, unknown 25.9
2666 Male, age 74, left hemisphere 20.5
1870 Female, age 42, unknown 19.9
1830 Male, age 51, unknown 18.8
2411 Female, age 72, unknown 18.7
1833 Male, age 53, unknown 18.0
2828 Female, age 72, unknown 17.4
1827 Male, age 72, unknown 15.5
2219 Male, age 76, both hemispheres 14.2
Dorsal raphe nucleus
nTPM: 17.2
1828 Male, age 53, unknown 19.7
2016 Female, age 72, unknown 18.2
2750 Male, age 76, both hemispheres 17.4
2047 Male, age 72, unknown 15.8
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 16.8
1848 Female, age 42, unknown 18.7
2849 Male, age 72, unknown 17.1
1890 Male, age 53, unknown 16.2
2097 Female, age 72, unknown 15.2
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 17.5
2502 Female, age 75, unknown 20.5
1947 Male, age 18, unknown 17.0
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 13.9
2464 Female, age 72, unknown 16.3
1840 Male, age 53, unknown 14.8
1831 Male, age 72, unknown 13.4
2850 Male, age 76, both hemispheres 11.2
Periaquaductal grey, lateral
nTPM: 13.3
2053 Male, age 18, unknown 14.2
2272 Male, age 74, both hemispheres 13.1
2140 Male, age 76, both hemispheres 12.7
Pretectal area
nTPM: 16.6
2007 Male, age 72, unknown 22.6
1817 Female, age 42, unknown 20.3
1815 Male, age 53, unknown 18.1
1944 Female, age 72, unknown 17.7
2407 Male, age 75, both hemispheres 16.5
1816 Male, age 51, unknown 15.8
2273 Male, age 74, both hemispheres 15.3
2316 Male, age 76, right hemisphere 15.0
2825 Male, age 18, unknown 14.3
2224 Female, age 72, unknown 14.2
2667 Female, age 75, unknown 13.2
Red nucleus
nTPM: 20.5
2785 Male, age 18, unknown 24.9
1821 Female, age 72, unknown 22.5
2769 Male, age 72, unknown 21.7
1865 Male, age 51, unknown 21.6
2588 Male, age 74, left hemisphere 20.9
2227 Male, age 72, unknown 20.8
2503 Female, age 72, unknown 20.7
2584 Male, age 75, left hemisphere 20.0
1954 Female, age 42, unknown 19.2
1904 Male, age 53, unknown 19.1
2823 Male, age 76, right hemisphere 17.6
2725 Female, age 75, unknown 16.9
Substantia nigra
nTPM: 17.5
2665 Male, age 74, both hemispheres 19.2
1851 Male, age 51, unknown 18.8
1941 Male, age 53, unknown 18.7
1889 Female, age 72, unknown 18.3
2583 Male, age 75, right hemisphere 18.2
2590 Female, age 75, unknown 17.7
1916 Female, age 42, unknown 16.6
2409 Female, age 72, unknown 16.5
2241 Male, age 72, unknown 15.6
2699 Male, age 18, unknown 15.0
Superior colliculus
nTPM: 18.1
2664 Male, age 75, both hemispheres 22.4
2668 Female, age 75, unknown 22.3
1895 Male, age 76, right hemisphere 19.7
1839 Male, age 51, unknown 18.4
1995 Male, age 72, unknown 18.2
2587 Male, age 74, left hemisphere 18.0
1913 Female, age 42, unknown 17.4
2087 Female, age 72, unknown 15.7
1796 Male, age 53, unknown 15.4
2261 Male, age 18, unknown 13.9
Ventral tegmental area
nTPM: 15.9
2410 Female, age 72, unknown 18.9
1915 Female, age 42, unknown 17.3
1942 Male, age 51, unknown 16.5
2223 Female, age 72, unknown 16.2
2021 Male, age 53, unknown 14.8
2218 Male, age 76, both hemispheres 11.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 17.6
Min nTPM: 6.5
Std nTPM: 2.3
Median nTPM: 10.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 17.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 16.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 15.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 15.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 15.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.4
FF:10158-103A5 76 years, female 22.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.5
Sample A Female 13.2
Sample B Female 12.2
Sample C Male 9.5
Sample D Male 12.0
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.8
Sample A Female 12.0
Sample B Female 10.4
Sample C Male 9.9
Sample D Male 8.8
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 10.8
Min nTPM: 10.0
Sample B Female 10.8
Sample C Male 10.0
Sample D Male 10.6
Superior colliculi
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 13.4
Sample C Male 12.9
Sample D Male 11.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.2
Sample A Male 26.2
Sample B Male 26.2
Sample C Female 28.5
Sample D Female 32.1

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