MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:24.6 nTPM
GTEx:5.6 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:3.1 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2586 Male, age 75, left hemisphere 24.6
2019 Male, age 18, unknown 19.4
2828 Female, age 72, unknown 17.9
1827 Male, age 72, unknown 16.4
2411 Female, age 72, unknown 15.8
2219 Male, age 76, both hemispheres 15.6
1833 Male, age 53, unknown 15.3
1870 Female, age 42, unknown 15.2
1830 Male, age 51, unknown 14.5
2666 Male, age 74, left hemisphere 13.3
Dorsal raphe nucleus
nTPM: 18.5
2298 Female, age 72, unknown 22.3
2016 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 17.5
2047 Male, age 72, unknown 16.3
2750 Male, age 76, both hemispheres 14.1
Inferior colliculus
nTPM: 15.1
2849 Male, age 72, unknown 16.1
1890 Male, age 53, unknown 15.6
1848 Female, age 42, unknown 14.3
2097 Female, age 72, unknown 14.3
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Periaquaductal grey, anterior
nTPM: 18.0
1795 Male, age 51, unknown 20.9
2502 Female, age 75, unknown 19.1
1947 Male, age 18, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 20.2
2850 Male, age 76, both hemispheres 25.9
1840 Male, age 53, unknown 20.0
2464 Female, age 72, unknown 17.6
1831 Male, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 24.6
2272 Male, age 74, both hemispheres 28.9
2140 Male, age 76, both hemispheres 26.4
2053 Male, age 18, unknown 18.4
Pretectal area
nTPM: 18.4
2273 Male, age 74, both hemispheres 26.7
2667 Female, age 75, unknown 19.3
2224 Female, age 72, unknown 19.0
1944 Female, age 72, unknown 18.7
2407 Male, age 75, both hemispheres 18.5
2007 Male, age 72, unknown 17.8
1816 Male, age 51, unknown 17.7
1817 Female, age 42, unknown 17.1
2825 Male, age 18, unknown 16.3
1815 Male, age 53, unknown 16.2
2316 Male, age 76, right hemisphere 15.2
Red nucleus
nTPM: 16.9
2785 Male, age 18, unknown 20.7
2769 Male, age 72, unknown 19.2
2584 Male, age 75, left hemisphere 18.0
2227 Male, age 72, unknown 17.6
1865 Male, age 51, unknown 17.5
2725 Female, age 75, unknown 16.9
2503 Female, age 72, unknown 16.7
2588 Male, age 74, left hemisphere 16.6
1904 Male, age 53, unknown 16.5
1954 Female, age 42, unknown 15.0
2823 Male, age 76, right hemisphere 13.9
1821 Female, age 72, unknown 13.7
Substantia nigra
nTPM: 14.6
2583 Male, age 75, right hemisphere 16.6
2590 Female, age 75, unknown 15.7
1851 Male, age 51, unknown 15.3
1916 Female, age 42, unknown 15.3
1941 Male, age 53, unknown 15.2
1889 Female, age 72, unknown 15.1
2409 Female, age 72, unknown 15.0
2699 Male, age 18, unknown 14.4
2665 Male, age 74, both hemispheres 12.3
2241 Male, age 72, unknown 11.3
Superior colliculus
nTPM: 18.3
1995 Male, age 72, unknown 23.6
2261 Male, age 18, unknown 23.2
2664 Male, age 75, both hemispheres 21.2
2087 Female, age 72, unknown 19.6
1913 Female, age 42, unknown 19.2
1796 Male, age 53, unknown 18.7
1839 Male, age 51, unknown 15.6
2587 Male, age 74, left hemisphere 14.7
2668 Female, age 75, unknown 14.4
1895 Male, age 76, right hemisphere 12.3
Ventral tegmental area
nTPM: 15.0
2021 Male, age 53, unknown 17.0
1942 Male, age 51, unknown 15.6
2223 Female, age 72, unknown 15.3
2410 Female, age 72, unknown 15.0
1915 Female, age 42, unknown 13.8
2218 Male, age 76, both hemispheres 13.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 12.6
Min nTPM: 2.9
Std nTPM: 1.5
Median nTPM: 5.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 12.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 9.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 9.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 9.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 9.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 9.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 8.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 8.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 8.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 8.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.3
Sample A Female 7.1
Sample B Female 6.5
Sample C Male 6.3
Sample D Male 7.6
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.8
Sample A Female 9.9
Sample B Female 6.8
Sample C Male 7.1
Sample D Male 7.5
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 8.6
Min nTPM: 7.5
Sample B Female 7.9
Sample C Male 8.6
Sample D Male 7.5
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.7
Sample A Female 7.8
Sample B Female 7.3
Sample C Male 6.7
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.7
Sample A Male 3.2
Sample B Male 3.0
Sample C Female 2.7
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68667685 Antisense, RP_050201_02_F11, Mouse strain C57BL/6J (56 days, male) 2.2

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