HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:35.9 nTPM
HPA Brain:34.5 nTPM
GTEx:35.9 nTPM
FANTOM5:6.6 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:25.2 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029429
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Hippocampus
nTPM: 34.5
2621 Female, age 67, right hemisphere 38.3
2529 Female, age 94, left hemisphere 36.7
1855 Male, age 76, left hemisphere 33.9
2148 Female, age 91, left hemisphere 33.7
1911 Female, age 85, right hemisphere 32.5
1898 Male, age 80, left hemisphere 32.1
Dentate gyrus
nTPM: 34.2
2010 Male, age 76, both hemispheres 41.7
2530 Female, age 94, left hemisphere 40.2
2531 Female, age 67, both hemispheres 33.9
2528 Male, age 74, both hemispheres 31.8
2246 Female, age 85, both hemispheres 29.3
1927 Female, age 91, both hemispheres 28.5
Entorhinal gyrus
nTPM: 32.9
2686 Male, age 75, right hemisphere 34.9
2117 Female, age 91, right hemisphere 34.6
2764 Male, age 80, right hemisphere 33.8
2613 Female, age 94, left hemisphere 33.3
1787 Male, age 76, left hemisphere 32.5
1938 Female, age 85, left hemisphere 28.4
Hippocampus, CA1
nTPM: 31.6
2045 Male, age 76, both hemispheres 37.6
2749 Male, age 80, left hemisphere 33.1
1873 Female, age 85, both hemispheres 31.2
2527 Male, age 74, both hemispheres 29.2
2082 Female, age 91, right hemisphere 26.8
Hippocampus, CA2
nTPM: 30.7
1892 Male, age 76, both hemispheres 37.0
2437 Female, age 94, left hemisphere 36.1
1963 Male, age 80, left hemisphere 33.1
1940 Female, age 85, left hemisphere 27.1
2249 Male, age 74, both hemispheres 26.0
2113 Female, age 91, right hemisphere 24.9
Hippocampus, CA3
nTPM: 34.1
2861 Female, age 67, both hemispheres 43.7
1867 Male, age 76, both hemispheres 40.0
2620 Female, age 94, left hemisphere 32.7
2137 Male, age 80, left hemisphere 31.1
2436 Male, age 74, both hemispheres 29.6
1891 Female, age 85, both hemispheres 27.8
Parahippocampal cortex
nTPM: 30.5
2245 Female, age 91, both hemispheres 37.3
2622 Female, age 67, right hemisphere 36.4
2532 Female, age 72, left hemisphere 33.6
2692 Male, age 74, both hemispheres 32.8
2018 Male, age 76, both hemispheres 29.4
1933 Female, age 85, both hemispheres 29.0
2250 Female, age 67, right hemisphere 28.2
1990 Female, age 91, right hemisphere 26.6
2693 Female, age 94, both hemispheres 26.3
1850 Male, age 80, both hemispheres 25.4
Perirhinal gyrus
nTPM: 28.0
2521 Female, age 94, right hemisphere 29.5
1794 Male, age 80, right hemisphere 28.4
2848 Male, age 76, right hemisphere 27.7
1841 Female, age 85, right hemisphere 27.3
1847 Female, age 91, left hemisphere 27.0
Subiculum
nTPM: 33.0
2042 Male, age 76, both hemispheres 37.3
2438 Female, age 94, left hemisphere 36.4
2619 Male, age 74, both hemispheres 36.1
1901 Male, age 80, both hemispheres 32.9
1977 Female, age 85, both hemispheres 28.7
2729 Female, age 91, right hemisphere 26.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.9
Samples: 197

Max nTPM: 68.7
Min nTPM: 14.5
Std nTPM: 9.4
Median nTPM: 34.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 68.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 64.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 61.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 57.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 56.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 56.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 55.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 55.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 54.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 53.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 53.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 6.6
FF:10153-102I9 76 years, female 10.1
FF:10169-103B7 60 years, female 3.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Subiculum
nTPM: 16.9
Samples: 4

Max nTPM: 21.3
Min nTPM: 13.5
Sample A Female 21.3
Sample B Female 14.9
Sample C Male 17.8
Sample D Male 13.5
Dorsal hippocampus
nTPM: 17.1
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.3
Sample A Female 19.2
Sample B Female 16.6
Sample C Male 19.1
Sample D Male 13.3
Entorhinal cortex
nTPM: 16.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.0
Sample A Female 18.0
Sample B Female 15.8
Sample C Male 16.8
Sample D Male 14.0
Ventral hippocampus
nTPM: 16.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 12.2
Sample A Female 15.7
Sample B Female 12.2
Sample C Male 21.6
Sample D Male 16.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.2
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.9
Sample A Male 26.0
Sample B Male 25.1
Sample C Female 22.9
Sample D Female 26.9
Hippocampal formation
nTPM: 19.9
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.5
Sample A Male 18.7
Sample B Male 18.5
Sample C Female 20.4
Sample D Female 22.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
601186 Antisense, RP_040831_01_H04, Mouse strain C57BL/6J (56 days, male) 0.2

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