MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.5 nTPM
HPA Brain:26.8 nTPM
GTEx:63.5 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:81.5 nTPM
Mouse:159.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2019 Male, age 18, unknown 31.8
1870 Female, age 42, unknown 27.3
2411 Female, age 72, unknown 26.8
1827 Male, age 72, unknown 23.6
2828 Female, age 72, unknown 23.0
2219 Male, age 76, both hemispheres 22.4
1833 Male, age 53, unknown 21.7
1830 Male, age 51, unknown 20.7
2586 Male, age 75, left hemisphere 19.4
2666 Male, age 74, left hemisphere 17.4
Dorsal raphe nucleus
nTPM: 26.8
2298 Female, age 72, unknown 31.8
1828 Male, age 53, unknown 26.9
2047 Male, age 72, unknown 26.9
2750 Male, age 76, both hemispheres 25.3
2016 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 26.4
2097 Female, age 72, unknown 32.0
1848 Female, age 42, unknown 27.4
1890 Male, age 53, unknown 27.4
2849 Male, age 72, unknown 18.8
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Periaquaductal grey, anterior
nTPM: 23.9
2502 Female, age 75, unknown 26.3
1947 Male, age 18, unknown 24.5
1795 Male, age 51, unknown 20.9
Periaquaductal grey, dorsal
nTPM: 21.4
1840 Male, age 53, unknown 25.6
2464 Female, age 72, unknown 21.9
2850 Male, age 76, both hemispheres 19.2
1831 Male, age 72, unknown 19.0
Periaquaductal grey, lateral
nTPM: 20.6
2272 Male, age 74, both hemispheres 23.3
2053 Male, age 18, unknown 20.0
2140 Male, age 76, both hemispheres 18.4
Pretectal area
nTPM: 25.4
2007 Male, age 72, unknown 32.4
2667 Female, age 75, unknown 28.5
1817 Female, age 42, unknown 28.0
1944 Female, age 72, unknown 28.0
1816 Male, age 51, unknown 27.2
2273 Male, age 74, both hemispheres 25.6
2224 Female, age 72, unknown 24.1
1815 Male, age 53, unknown 21.9
2316 Male, age 76, right hemisphere 21.9
2407 Male, age 75, both hemispheres 21.4
2825 Male, age 18, unknown 20.5
Red nucleus
nTPM: 24.3
1821 Female, age 72, unknown 30.5
2503 Female, age 72, unknown 27.1
1954 Female, age 42, unknown 26.2
2769 Male, age 72, unknown 26.1
2785 Male, age 18, unknown 26.1
1865 Male, age 51, unknown 25.5
1904 Male, age 53, unknown 25.4
2823 Male, age 76, right hemisphere 24.0
2227 Male, age 72, unknown 23.4
2725 Female, age 75, unknown 21.3
2584 Male, age 75, left hemisphere 18.7
2588 Male, age 74, left hemisphere 17.7
Substantia nigra
nTPM: 25.1
1916 Female, age 42, unknown 31.0
1889 Female, age 72, unknown 29.7
2241 Male, age 72, unknown 29.3
1941 Male, age 53, unknown 28.3
1851 Male, age 51, unknown 28.1
2409 Female, age 72, unknown 22.7
2590 Female, age 75, unknown 22.6
2583 Male, age 75, right hemisphere 20.8
2665 Male, age 74, both hemispheres 19.5
2699 Male, age 18, unknown 19.1
Superior colliculus
nTPM: 22.2
2087 Female, age 72, unknown 25.3
1895 Male, age 76, right hemisphere 24.4
1913 Female, age 42, unknown 23.9
2261 Male, age 18, unknown 23.4
2587 Male, age 74, left hemisphere 22.9
2668 Female, age 75, unknown 21.8
1796 Male, age 53, unknown 21.3
1839 Male, age 51, unknown 21.2
1995 Male, age 72, unknown 20.6
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 24.0
1915 Female, age 42, unknown 26.8
2223 Female, age 72, unknown 25.3
1942 Male, age 51, unknown 24.2
2218 Male, age 76, both hemispheres 24.1
2410 Female, age 72, unknown 23.9
2021 Male, age 53, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.5
Samples: 139

Max nTPM: 112.0
Min nTPM: 39.7
Std nTPM: 11.6
Median nTPM: 61.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 112.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 101.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 93.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 93.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 88.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 85.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 85.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 85.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 84.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.2
FF:10158-103A5 76 years, female 78.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 81.7
Min nTPM: 51.4
Sample A Female 81.7
Sample B Female 52.6
Sample C Male 69.6
Sample D Male 51.4
Midbrain
nTPM: 76.8
Samples: 4

Max nTPM: 93.8
Min nTPM: 66.2
Sample A Female 66.2
Sample B Female 66.8
Sample C Male 80.5
Sample D Male 93.8
Periaqueductal gray
nTPM: 61.4
Samples: 3

Max nTPM: 67.1
Min nTPM: 50.2
Sample B Female 50.2
Sample C Male 66.9
Sample D Male 67.1
Superior colliculi
nTPM: 81.5
Samples: 4

Max nTPM: 95.3
Min nTPM: 54.7
Sample A Female 94.7
Sample B Female 54.7
Sample C Male 95.3
Sample D Male 81.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 159.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 159.5
Samples: 4

Max nTPM: 188.1
Min nTPM: 142.3
Sample A Male 188.1
Sample B Male 142.3
Sample C Female 148.7
Sample D Female 158.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70295894 Antisense, RP_050531_04_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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