MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.1 nTPM
HPA Brain:16.7 nTPM
GTEx:12.1 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:34.6 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2586 Male, age 75, left hemisphere 20.5
2019 Male, age 18, unknown 18.7
2666 Male, age 74, left hemisphere 17.9
1827 Male, age 72, unknown 16.8
2828 Female, age 72, unknown 16.8
2411 Female, age 72, unknown 16.2
2219 Male, age 76, both hemispheres 15.5
1830 Male, age 51, unknown 15.3
1833 Male, age 53, unknown 15.0
1870 Female, age 42, unknown 14.1
Dorsal raphe nucleus
nTPM: 14.2
2750 Male, age 76, both hemispheres 15.0
2298 Female, age 72, unknown 14.8
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 13.8
2016 Female, age 72, unknown 12.6
Inferior colliculus
nTPM: 15.2
2849 Male, age 72, unknown 15.6
1848 Female, age 42, unknown 15.3
1890 Male, age 53, unknown 15.0
2097 Female, age 72, unknown 14.8
Median raphe nucleus
nTPM: 14.8
2220 Male, age 76, midline 14.8
Periaquaductal grey, anterior
nTPM: 16.0
2502 Female, age 75, unknown 16.4
1947 Male, age 18, unknown 16.1
1795 Male, age 51, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 14.0
2464 Female, age 72, unknown 15.7
1840 Male, age 53, unknown 14.4
1831 Male, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 12.9
Periaquaductal grey, lateral
nTPM: 13.8
2140 Male, age 76, both hemispheres 14.4
2053 Male, age 18, unknown 13.7
2272 Male, age 74, both hemispheres 13.2
Pretectal area
nTPM: 16.3
2007 Male, age 72, unknown 19.2
1816 Male, age 51, unknown 18.9
1817 Female, age 42, unknown 18.1
1944 Female, age 72, unknown 17.8
2407 Male, age 75, both hemispheres 17.1
1815 Male, age 53, unknown 16.7
2667 Female, age 75, unknown 15.7
2316 Male, age 76, right hemisphere 14.9
2825 Male, age 18, unknown 14.0
2224 Female, age 72, unknown 13.9
2273 Male, age 74, both hemispheres 13.5
Red nucleus
nTPM: 16.0
2584 Male, age 75, left hemisphere 19.0
2588 Male, age 74, left hemisphere 18.6
2785 Male, age 18, unknown 17.6
2823 Male, age 76, right hemisphere 16.7
1865 Male, age 51, unknown 15.8
2769 Male, age 72, unknown 15.7
1904 Male, age 53, unknown 15.4
2725 Female, age 75, unknown 14.9
2503 Female, age 72, unknown 14.8
1821 Female, age 72, unknown 14.7
1954 Female, age 42, unknown 14.6
2227 Male, age 72, unknown 14.5
Substantia nigra
nTPM: 16.3
2583 Male, age 75, right hemisphere 18.1
1916 Female, age 42, unknown 17.8
1851 Male, age 51, unknown 16.9
2590 Female, age 75, unknown 16.8
1941 Male, age 53, unknown 16.6
2665 Male, age 74, both hemispheres 16.4
2241 Male, age 72, unknown 16.3
1889 Female, age 72, unknown 15.5
2409 Female, age 72, unknown 15.0
2699 Male, age 18, unknown 14.0
Superior colliculus
nTPM: 16.2
2087 Female, age 72, unknown 18.4
1796 Male, age 53, unknown 17.9
2664 Male, age 75, both hemispheres 17.9
2261 Male, age 18, unknown 17.3
2668 Female, age 75, unknown 17.0
1895 Male, age 76, right hemisphere 15.2
1995 Male, age 72, unknown 14.9
1839 Male, age 51, unknown 14.6
1913 Female, age 42, unknown 14.4
2587 Male, age 74, left hemisphere 14.1
Ventral tegmental area
nTPM: 15.7
2410 Female, age 72, unknown 17.4
1942 Male, age 51, unknown 15.9
2021 Male, age 53, unknown 15.6
1915 Female, age 42, unknown 15.3
2223 Female, age 72, unknown 15.1
2218 Male, age 76, both hemispheres 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.1
Samples: 139

Max nTPM: 25.9
Min nTPM: 6.3
Std nTPM: 2.7
Median nTPM: 12.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 18.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 17.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 16.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 16.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 16.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 16.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.8
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 5.0
Sample C Male 4.9
Sample D Male 4.9
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.8
Sample A Female 6.2
Sample B Female 4.1
Sample C Male 5.1
Sample D Male 3.8
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.2
Min nTPM: 3.5
Sample B Female 4.1
Sample C Male 4.2
Sample D Male 3.5
Superior colliculi
nTPM: 4.6
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.6
Sample C Male 4.5
Sample D Male 4.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 35.3
Min nTPM: 33.4
Sample A Male 33.4
Sample B Male 35.0
Sample C Female 35.3
Sample D Female 34.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69169517 Antisense, RP_050321_03_G02, Mouse strain C57BL/6J (56 days, male) 5.8

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