MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.0 nTPM
HPA Brain:54.4 nTPM
GTEx:97.0 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Pig:27.9 nTPM
Mouse:11.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
1870 Female, age 42, unknown 64.7
2411 Female, age 72, unknown 58.3
2828 Female, age 72, unknown 54.1
1833 Male, age 53, unknown 52.7
2586 Male, age 75, left hemisphere 51.8
1830 Male, age 51, unknown 49.5
1827 Male, age 72, unknown 43.7
2666 Male, age 74, left hemisphere 37.3
2019 Male, age 18, unknown 36.4
2219 Male, age 76, both hemispheres 34.6
Dorsal raphe nucleus
nTPM: 54.4
2750 Male, age 76, both hemispheres 62.5
2016 Female, age 72, unknown 57.4
2298 Female, age 72, unknown 52.9
2047 Male, age 72, unknown 50.0
1828 Male, age 53, unknown 49.4
Inferior colliculus
nTPM: 40.1
2097 Female, age 72, unknown 42.9
1848 Female, age 42, unknown 41.6
2849 Male, age 72, unknown 39.9
1890 Male, age 53, unknown 36.3
Median raphe nucleus
nTPM: 51.1
2220 Male, age 76, midline 51.1
Periaquaductal grey, anterior
nTPM: 49.3
2502 Female, age 75, unknown 51.8
1947 Male, age 18, unknown 51.6
1795 Male, age 51, unknown 44.6
Periaquaductal grey, dorsal
nTPM: 44.5
2850 Male, age 76, both hemispheres 48.7
1831 Male, age 72, unknown 43.7
1840 Male, age 53, unknown 43.0
2464 Female, age 72, unknown 42.5
Periaquaductal grey, lateral
nTPM: 47.0
2053 Male, age 18, unknown 52.9
2140 Male, age 76, both hemispheres 49.9
2272 Male, age 74, both hemispheres 38.1
Pretectal area
nTPM: 43.2
2224 Female, age 72, unknown 55.6
2667 Female, age 75, unknown 53.7
2825 Male, age 18, unknown 53.5
2273 Male, age 74, both hemispheres 49.7
2316 Male, age 76, right hemisphere 46.4
1815 Male, age 53, unknown 43.8
2407 Male, age 75, both hemispheres 41.3
1817 Female, age 42, unknown 39.5
2007 Male, age 72, unknown 33.1
1944 Female, age 72, unknown 30.1
1816 Male, age 51, unknown 28.6
Red nucleus
nTPM: 53.6
1904 Male, age 53, unknown 65.7
1821 Female, age 72, unknown 64.4
2769 Male, age 72, unknown 62.4
2227 Male, age 72, unknown 60.1
2503 Female, age 72, unknown 59.8
1954 Female, age 42, unknown 59.0
1865 Male, age 51, unknown 58.7
2823 Male, age 76, right hemisphere 52.9
2785 Male, age 18, unknown 42.4
2725 Female, age 75, unknown 41.0
2588 Male, age 74, left hemisphere 40.8
2584 Male, age 75, left hemisphere 35.8
Substantia nigra
nTPM: 46.0
2699 Male, age 18, unknown 65.0
1851 Male, age 51, unknown 61.0
2590 Female, age 75, unknown 51.2
1916 Female, age 42, unknown 46.9
2583 Male, age 75, right hemisphere 43.2
1889 Female, age 72, unknown 42.2
1941 Male, age 53, unknown 41.3
2241 Male, age 72, unknown 39.5
2409 Female, age 72, unknown 36.3
2665 Male, age 74, both hemispheres 33.5
Superior colliculus
nTPM: 45.9
1913 Female, age 42, unknown 60.0
2664 Male, age 75, both hemispheres 58.4
1995 Male, age 72, unknown 57.5
2587 Male, age 74, left hemisphere 50.5
1839 Male, age 51, unknown 45.9
1796 Male, age 53, unknown 44.4
1895 Male, age 76, right hemisphere 38.4
2668 Female, age 75, unknown 37.8
2261 Male, age 18, unknown 33.1
2087 Female, age 72, unknown 32.8
Ventral tegmental area
nTPM: 53.9
2410 Female, age 72, unknown 61.3
2223 Female, age 72, unknown 57.8
1915 Female, age 42, unknown 55.8
1942 Male, age 51, unknown 53.7
2021 Male, age 53, unknown 51.3
2218 Male, age 76, both hemispheres 43.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.0
Samples: 139

Max nTPM: 202.7
Min nTPM: 43.5
Std nTPM: 25.2
Median nTPM: 93.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 202.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 177.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 146.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 146.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 141.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 140.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 138.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 138.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 137.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 137.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 136.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.7
FF:10158-103A5 76 years, female 68.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 26.1
Min nTPM: 22.2
Sample A Female 26.1
Sample B Female 24.9
Sample C Male 22.2
Sample D Male 25.0
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 51.1
Min nTPM: 17.6
Sample A Female 51.1
Sample B Female 23.7
Sample C Male 17.6
Sample D Male 18.7
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 21.5
Min nTPM: 18.5
Sample B Female 18.8
Sample C Male 21.5
Sample D Male 18.5
Superior colliculi
nTPM: 27.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 20.2
Sample A Female 31.6
Sample B Female 39.0
Sample C Male 20.7
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.4
Sample A Male 13.5
Sample B Male 10.4
Sample C Female 12.6
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77620762 Antisense, RP_070129_03_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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