MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:14.4 nTPM
GTEx:6.4 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:12.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
1827 Male, age 72, unknown 8.8
2219 Male, age 76, both hemispheres 8.2
2828 Female, age 72, unknown 7.9
2019 Male, age 18, unknown 7.7
1870 Female, age 42, unknown 6.8
1830 Male, age 51, unknown 6.6
2666 Male, age 74, left hemisphere 6.3
2586 Male, age 75, left hemisphere 6.2
2411 Female, age 72, unknown 5.6
1833 Male, age 53, unknown 5.3
Dorsal raphe nucleus
nTPM: 10.3
2298 Female, age 72, unknown 13.6
2016 Female, age 72, unknown 11.0
1828 Male, age 53, unknown 10.3
2047 Male, age 72, unknown 8.8
2750 Male, age 76, both hemispheres 7.6
Inferior colliculus
nTPM: 9.4
2097 Female, age 72, unknown 11.8
1890 Male, age 53, unknown 10.1
2849 Male, age 72, unknown 8.2
1848 Female, age 42, unknown 7.5
Median raphe nucleus
nTPM: 12.4
2220 Male, age 76, midline 12.4
Periaquaductal grey, anterior
nTPM: 9.5
1795 Male, age 51, unknown 11.8
2502 Female, age 75, unknown 8.4
1947 Male, age 18, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 12.1
2850 Male, age 76, both hemispheres 16.0
1831 Male, age 72, unknown 12.6
1840 Male, age 53, unknown 11.9
2464 Female, age 72, unknown 7.9
Periaquaductal grey, lateral
nTPM: 14.4
2272 Male, age 74, both hemispheres 21.3
2140 Male, age 76, both hemispheres 11.3
2053 Male, age 18, unknown 10.7
Pretectal area
nTPM: 11.5
2273 Male, age 74, both hemispheres 21.7
2224 Female, age 72, unknown 13.7
1816 Male, age 51, unknown 13.0
2667 Female, age 75, unknown 12.5
1817 Female, age 42, unknown 11.6
1944 Female, age 72, unknown 11.1
2007 Male, age 72, unknown 10.3
1815 Male, age 53, unknown 9.8
2825 Male, age 18, unknown 8.5
2407 Male, age 75, both hemispheres 7.8
2316 Male, age 76, right hemisphere 6.7
Red nucleus
nTPM: 6.8
1954 Female, age 42, unknown 8.8
2725 Female, age 75, unknown 8.8
1821 Female, age 72, unknown 8.0
2503 Female, age 72, unknown 8.0
2785 Male, age 18, unknown 7.7
1904 Male, age 53, unknown 7.1
2769 Male, age 72, unknown 6.9
1865 Male, age 51, unknown 6.6
2227 Male, age 72, unknown 5.8
2584 Male, age 75, left hemisphere 5.5
2588 Male, age 74, left hemisphere 4.3
2823 Male, age 76, right hemisphere 4.3
Substantia nigra
nTPM: 8.3
2409 Female, age 72, unknown 10.8
1916 Female, age 42, unknown 9.8
1889 Female, age 72, unknown 9.1
2665 Male, age 74, both hemispheres 8.8
2241 Male, age 72, unknown 8.7
1851 Male, age 51, unknown 8.6
2699 Male, age 18, unknown 7.5
2590 Female, age 75, unknown 7.3
1941 Male, age 53, unknown 6.5
2583 Male, age 75, right hemisphere 6.2
Superior colliculus
nTPM: 8.9
2261 Male, age 18, unknown 13.7
2087 Female, age 72, unknown 11.1
1796 Male, age 53, unknown 9.9
2587 Male, age 74, left hemisphere 9.7
1995 Male, age 72, unknown 9.0
2664 Male, age 75, both hemispheres 9.0
1913 Female, age 42, unknown 8.6
2668 Female, age 75, unknown 7.1
1839 Male, age 51, unknown 6.4
1895 Male, age 76, right hemisphere 4.2
Ventral tegmental area
nTPM: 9.0
2021 Male, age 53, unknown 11.6
1915 Female, age 42, unknown 10.1
2218 Male, age 76, both hemispheres 8.7
2223 Female, age 72, unknown 8.2
1942 Male, age 51, unknown 8.0
2410 Female, age 72, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 14.5
Min nTPM: 1.7
Std nTPM: 2.1
Median nTPM: 6.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 14.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 11.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 10.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 10.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 10.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 10.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 10.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 9.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 9.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 9.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 7.2
Sample A Female 12.8
Sample B Female 9.5
Sample C Male 10.4
Sample D Male 7.2
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 18.9
Min nTPM: 8.8
Sample A Female 18.9
Sample B Female 11.2
Sample C Male 8.8
Sample D Male 9.3
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 18.7
Min nTPM: 12.6
Sample B Female 12.6
Sample C Male 18.7
Sample D Male 16.0
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 8.3
Sample A Female 12.7
Sample B Female 13.5
Sample C Male 8.3
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 12.2
Sample A Male 13.2
Sample B Male 12.7
Sample C Female 13.5
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
634462 Antisense, RP_040914_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0

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