MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.7 nTPM
HPA Brain:31.0 nTPM
GTEx:22.7 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:14.7 nTPM
Mouse:21.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
2019 Male, age 18, unknown 33.6
1833 Male, age 53, unknown 32.1
2411 Female, age 72, unknown 31.5
1830 Male, age 51, unknown 31.1
1870 Female, age 42, unknown 29.9
2828 Female, age 72, unknown 27.9
1827 Male, age 72, unknown 27.3
2219 Male, age 76, both hemispheres 26.5
2666 Male, age 74, left hemisphere 25.0
2586 Male, age 75, left hemisphere 21.8
Dorsal raphe nucleus
nTPM: 29.4
2016 Female, age 72, unknown 31.4
2750 Male, age 76, both hemispheres 30.3
2047 Male, age 72, unknown 29.9
1828 Male, age 53, unknown 28.5
2298 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 29.1
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 29.5
1890 Male, age 53, unknown 28.6
2097 Female, age 72, unknown 28.4
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Periaquaductal grey, anterior
nTPM: 25.8
1947 Male, age 18, unknown 27.8
1795 Male, age 51, unknown 25.2
2502 Female, age 75, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 29.8
2850 Male, age 76, both hemispheres 31.2
2464 Female, age 72, unknown 31.0
1840 Male, age 53, unknown 29.6
1831 Male, age 72, unknown 27.5
Periaquaductal grey, lateral
nTPM: 31.0
2140 Male, age 76, both hemispheres 33.3
2272 Male, age 74, both hemispheres 30.7
2053 Male, age 18, unknown 29.0
Pretectal area
nTPM: 27.3
2273 Male, age 74, both hemispheres 32.8
2316 Male, age 76, right hemisphere 31.0
2224 Female, age 72, unknown 28.1
2407 Male, age 75, both hemispheres 28.0
2667 Female, age 75, unknown 28.0
1815 Male, age 53, unknown 27.2
2825 Male, age 18, unknown 26.7
1817 Female, age 42, unknown 26.4
2007 Male, age 72, unknown 25.8
1944 Female, age 72, unknown 24.0
1816 Male, age 51, unknown 22.1
Red nucleus
nTPM: 30.0
2725 Female, age 75, unknown 34.1
2823 Male, age 76, right hemisphere 33.2
1865 Male, age 51, unknown 31.3
1821 Female, age 72, unknown 31.0
1954 Female, age 42, unknown 30.5
2785 Male, age 18, unknown 30.0
2584 Male, age 75, left hemisphere 29.2
2769 Male, age 72, unknown 29.0
2503 Female, age 72, unknown 28.9
1904 Male, age 53, unknown 28.6
2227 Male, age 72, unknown 26.9
2588 Male, age 74, left hemisphere 26.8
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 30.4
1941 Male, age 53, unknown 29.5
2583 Male, age 75, right hemisphere 29.0
1889 Female, age 72, unknown 27.9
2409 Female, age 72, unknown 26.2
2590 Female, age 75, unknown 25.8
2699 Male, age 18, unknown 25.7
1851 Male, age 51, unknown 24.1
1916 Female, age 42, unknown 23.4
2665 Male, age 74, both hemispheres 22.9
Superior colliculus
nTPM: 28.0
1913 Female, age 42, unknown 32.5
1895 Male, age 76, right hemisphere 32.0
1995 Male, age 72, unknown 31.7
1839 Male, age 51, unknown 31.3
2587 Male, age 74, left hemisphere 29.8
2087 Female, age 72, unknown 25.4
2668 Female, age 75, unknown 25.4
1796 Male, age 53, unknown 24.2
2261 Male, age 18, unknown 24.2
2664 Male, age 75, both hemispheres 23.5
Ventral tegmental area
nTPM: 26.5
1942 Male, age 51, unknown 28.1
2410 Female, age 72, unknown 27.5
2218 Male, age 76, both hemispheres 27.0
2021 Male, age 53, unknown 26.4
2223 Female, age 72, unknown 25.4
1915 Female, age 42, unknown 24.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.7
Samples: 139

Max nTPM: 40.0
Min nTPM: 6.1
Std nTPM: 6.2
Median nTPM: 21.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 39.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 39.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 38.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 37.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 37.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 35.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 35.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 32.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.9
FF:10158-103A5 76 years, female 62.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 12.4
Min nTPM: 10.3
Sample A Female 12.3
Sample B Female 10.3
Sample C Male 11.9
Sample D Male 12.4
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.2
Sample A Female 12.6
Sample B Female 12.2
Sample C Male 15.9
Sample D Male 15.2
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 12.4
Min nTPM: 12.2
Sample B Female 12.2
Sample C Male 12.4
Sample D Male 12.3
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.6
Sample A Female 14.4
Sample B Female 13.6
Sample C Male 16.6
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 18.8
Sample A Male 18.8
Sample B Male 21.9
Sample C Female 22.0
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74990483 Antisense, RP_060410_01_A06, Mouse strain C57BL/6J (56 days, male) 0.8
112643861 Antisense, RP_110421_01_B05, Mouse strain C57BL/6J (56 days, male) 0.6
68191330 Antisense, RP_041129_01_A03, Mouse strain C57BL/6J (56 days, male) 0.1
70812853 Antisense, RP_050712_02_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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