MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.8 nTPM
HPA Brain:110.0 nTPM
GTEx:122.8 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:222.5 nTPM
Mouse:292.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.1
2019 Male, age 18, unknown 118.6
2411 Female, age 72, unknown 99.9
1827 Male, age 72, unknown 84.0
2828 Female, age 72, unknown 73.9
1870 Female, age 42, unknown 73.0
2219 Male, age 76, both hemispheres 73.0
1833 Male, age 53, unknown 68.8
1830 Male, age 51, unknown 68.4
2586 Male, age 75, left hemisphere 61.3
2666 Male, age 74, left hemisphere 60.6
Dorsal raphe nucleus
nTPM: 91.9
2298 Female, age 72, unknown 112.1
1828 Male, age 53, unknown 103.2
2047 Male, age 72, unknown 89.8
2750 Male, age 76, both hemispheres 85.4
2016 Female, age 72, unknown 69.0
Inferior colliculus
nTPM: 77.2
2097 Female, age 72, unknown 96.3
1890 Male, age 53, unknown 81.6
1848 Female, age 42, unknown 73.8
2849 Male, age 72, unknown 57.2
Median raphe nucleus
nTPM: 84.7
2220 Male, age 76, midline 84.7
Periaquaductal grey, anterior
nTPM: 76.7
2502 Female, age 75, unknown 80.7
1947 Male, age 18, unknown 74.7
1795 Male, age 51, unknown 74.6
Periaquaductal grey, dorsal
nTPM: 66.8
2850 Male, age 76, both hemispheres 69.0
1840 Male, age 53, unknown 68.1
2464 Female, age 72, unknown 66.0
1831 Male, age 72, unknown 64.2
Periaquaductal grey, lateral
nTPM: 69.0
2272 Male, age 74, both hemispheres 80.3
2140 Male, age 76, both hemispheres 66.2
2053 Male, age 18, unknown 60.5
Pretectal area
nTPM: 93.7
2007 Male, age 72, unknown 121.4
1816 Male, age 51, unknown 119.2
1944 Female, age 72, unknown 116.5
1817 Female, age 42, unknown 111.4
2667 Female, age 75, unknown 103.3
1815 Male, age 53, unknown 95.9
2273 Male, age 74, both hemispheres 88.8
2224 Female, age 72, unknown 81.8
2316 Male, age 76, right hemisphere 71.9
2825 Male, age 18, unknown 64.2
2407 Male, age 75, both hemispheres 56.8
Red nucleus
nTPM: 84.5
1821 Female, age 72, unknown 110.8
2785 Male, age 18, unknown 101.6
2503 Female, age 72, unknown 88.2
2823 Male, age 76, right hemisphere 87.7
2725 Female, age 75, unknown 87.1
1865 Male, age 51, unknown 83.4
1904 Male, age 53, unknown 83.3
1954 Female, age 42, unknown 80.4
2227 Male, age 72, unknown 76.8
2769 Male, age 72, unknown 76.7
2584 Male, age 75, left hemisphere 69.1
2588 Male, age 74, left hemisphere 69.0
Substantia nigra
nTPM: 110.0
1916 Female, age 42, unknown 151.9
2241 Male, age 72, unknown 144.0
2409 Female, age 72, unknown 127.0
1851 Male, age 51, unknown 120.3
1889 Female, age 72, unknown 114.2
1941 Male, age 53, unknown 112.0
2665 Male, age 74, both hemispheres 91.4
2699 Male, age 18, unknown 86.2
2590 Female, age 75, unknown 82.8
2583 Male, age 75, right hemisphere 69.9
Superior colliculus
nTPM: 76.5
2087 Female, age 72, unknown 103.5
1895 Male, age 76, right hemisphere 87.3
2587 Male, age 74, left hemisphere 85.5
2261 Male, age 18, unknown 81.8
2668 Female, age 75, unknown 78.3
1796 Male, age 53, unknown 77.3
1839 Male, age 51, unknown 68.6
1913 Female, age 42, unknown 65.3
1995 Male, age 72, unknown 63.3
2664 Male, age 75, both hemispheres 54.6
Ventral tegmental area
nTPM: 93.0
2410 Female, age 72, unknown 122.5
1915 Female, age 42, unknown 109.2
2218 Male, age 76, both hemispheres 96.3
2223 Female, age 72, unknown 79.0
1942 Male, age 51, unknown 78.6
2021 Male, age 53, unknown 72.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.8
Samples: 139

Max nTPM: 252.5
Min nTPM: 67.2
Std nTPM: 31.7
Median nTPM: 118.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 252.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 230.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 220.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 207.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 198.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 193.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 188.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 177.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 174.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 171.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 168.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.3
FF:10158-103A5 76 years, female 56.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 222.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 189.0
Samples: 4

Max nTPM: 237.0
Min nTPM: 149.9
Sample A Female 237.0
Sample B Female 149.9
Sample C Male 201.6
Sample D Male 167.6
Midbrain
nTPM: 207.2
Samples: 4

Max nTPM: 246.7
Min nTPM: 176.8
Sample A Female 246.7
Sample B Female 176.8
Sample C Male 225.6
Sample D Male 179.5
Periaqueductal gray
nTPM: 146.6
Samples: 3

Max nTPM: 164.6
Min nTPM: 130.5
Sample B Female 144.7
Sample C Male 164.6
Sample D Male 130.5
Superior colliculi
nTPM: 222.5
Samples: 4

Max nTPM: 272.5
Min nTPM: 168.1
Sample A Female 247.5
Sample B Female 168.1
Sample C Male 272.5
Sample D Male 201.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 292.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 292.9
Samples: 4

Max nTPM: 301.0
Min nTPM: 281.5
Sample A Male 289.9
Sample B Male 301.0
Sample C Female 281.5
Sample D Female 299.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
1888 Antisense, RP_Baylor_103100, Mouse strain C57BL/6J (56 days, male) 5.7
1889 Antisense, RP_Baylor_103100, Mouse strain C57BL/6J (56 days, male) 1.3

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