MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.5 nTPM
HPA Brain:20.4 nTPM
GTEx:19.5 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:51.1 nTPM
Mouse:31.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.5
1870 Female, age 42, unknown 20.9
2666 Male, age 74, left hemisphere 20.1
1827 Male, age 72, unknown 19.9
1833 Male, age 53, unknown 19.6
2586 Male, age 75, left hemisphere 18.9
2411 Female, age 72, unknown 18.6
2828 Female, age 72, unknown 18.1
2219 Male, age 76, both hemispheres 17.2
2019 Male, age 18, unknown 16.4
1830 Male, age 51, unknown 15.5
Dorsal raphe nucleus
nTPM: 18.2
2298 Female, age 72, unknown 20.2
2016 Female, age 72, unknown 18.3
1828 Male, age 53, unknown 17.7
2750 Male, age 76, both hemispheres 17.6
2047 Male, age 72, unknown 17.2
Inferior colliculus
nTPM: 18.4
2849 Male, age 72, unknown 19.9
2097 Female, age 72, unknown 19.0
1848 Female, age 42, unknown 17.7
1890 Male, age 53, unknown 17.2
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Periaquaductal grey, anterior
nTPM: 17.4
2502 Female, age 75, unknown 18.0
1795 Male, age 51, unknown 17.5
1947 Male, age 18, unknown 16.6
Periaquaductal grey, dorsal
nTPM: 18.5
1831 Male, age 72, unknown 21.5
1840 Male, age 53, unknown 19.2
2850 Male, age 76, both hemispheres 17.9
2464 Female, age 72, unknown 15.5
Periaquaductal grey, lateral
nTPM: 16.5
2053 Male, age 18, unknown 16.7
2140 Male, age 76, both hemispheres 16.6
2272 Male, age 74, both hemispheres 16.1
Pretectal area
nTPM: 18.5
1944 Female, age 72, unknown 23.6
1817 Female, age 42, unknown 20.6
2407 Male, age 75, both hemispheres 19.6
2825 Male, age 18, unknown 19.6
1816 Male, age 51, unknown 19.4
2224 Female, age 72, unknown 19.3
2007 Male, age 72, unknown 19.0
1815 Male, age 53, unknown 18.6
2667 Female, age 75, unknown 15.6
2273 Male, age 74, both hemispheres 15.3
2316 Male, age 76, right hemisphere 13.1
Red nucleus
nTPM: 18.1
2725 Female, age 75, unknown 21.8
1821 Female, age 72, unknown 21.7
2503 Female, age 72, unknown 20.0
1954 Female, age 42, unknown 19.3
2588 Male, age 74, left hemisphere 19.1
1904 Male, age 53, unknown 17.1
2785 Male, age 18, unknown 17.1
1865 Male, age 51, unknown 16.8
2823 Male, age 76, right hemisphere 16.6
2227 Male, age 72, unknown 16.2
2769 Male, age 72, unknown 16.2
2584 Male, age 75, left hemisphere 15.5
Substantia nigra
nTPM: 20.4
2409 Female, age 72, unknown 24.5
1916 Female, age 42, unknown 22.5
2241 Male, age 72, unknown 21.5
1941 Male, age 53, unknown 21.3
1851 Male, age 51, unknown 21.1
2699 Male, age 18, unknown 20.7
2583 Male, age 75, right hemisphere 18.9
2590 Female, age 75, unknown 18.9
1889 Female, age 72, unknown 18.3
2665 Male, age 74, both hemispheres 16.1
Superior colliculus
nTPM: 17.2
2587 Male, age 74, left hemisphere 19.7
2261 Male, age 18, unknown 19.1
1895 Male, age 76, right hemisphere 18.9
1839 Male, age 51, unknown 18.3
1796 Male, age 53, unknown 17.5
2087 Female, age 72, unknown 17.2
2668 Female, age 75, unknown 17.2
1913 Female, age 42, unknown 15.0
1995 Male, age 72, unknown 15.0
2664 Male, age 75, both hemispheres 14.5
Ventral tegmental area
nTPM: 19.5
1942 Male, age 51, unknown 20.9
2218 Male, age 76, both hemispheres 20.5
2410 Female, age 72, unknown 19.9
1915 Female, age 42, unknown 19.5
2021 Male, age 53, unknown 18.6
2223 Female, age 72, unknown 17.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.5
Samples: 139

Max nTPM: 35.1
Min nTPM: 10.3
Std nTPM: 4.6
Median nTPM: 19.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 34.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 31.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 31.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 29.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 29.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 29.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 28.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 27.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 32.3
Sample A Female 54.6
Sample B Female 45.0
Sample C Male 55.0
Sample D Male 32.3
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 58.5
Min nTPM: 37.0
Sample A Female 37.0
Sample B Female 47.9
Sample C Male 58.5
Sample D Male 58.0
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 52.2
Min nTPM: 43.5
Sample B Female 43.5
Sample C Male 52.2
Sample D Male 46.9
Superior colliculi
nTPM: 51.1
Samples: 4

Max nTPM: 55.6
Min nTPM: 43.6
Sample A Female 55.0
Sample B Female 43.6
Sample C Male 55.6
Sample D Male 50.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.3
Samples: 4

Max nTPM: 34.2
Min nTPM: 27.7
Sample A Male 34.2
Sample B Male 32.0
Sample C Female 31.3
Sample D Female 27.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70523780 Antisense, RP_050301_02_G09, Mouse strain C57BL/6J (56 days, male) 0.3

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