HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:11.8 nTPM
GTEx:20.2 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:27.3 nTPM
Mouse:68.1 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021648
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Hippocampus
nTPM: 6.9
1898 Male, age 80, left hemisphere 14.8
2148 Female, age 91, left hemisphere 6.7
1855 Male, age 76, left hemisphere 6.0
2529 Female, age 94, left hemisphere 5.8
2621 Female, age 67, right hemisphere 4.8
1911 Female, age 85, right hemisphere 3.2
Dentate gyrus
nTPM: 7.2
1927 Female, age 91, both hemispheres 12.2
2530 Female, age 94, left hemisphere 10.1
2010 Male, age 76, both hemispheres 8.0
2528 Male, age 74, both hemispheres 6.8
2246 Female, age 85, both hemispheres 4.5
2531 Female, age 67, both hemispheres 1.8
Entorhinal gyrus
nTPM: 8.7
2764 Male, age 80, right hemisphere 12.4
1787 Male, age 76, left hemisphere 9.5
2117 Female, age 91, right hemisphere 9.2
2613 Female, age 94, left hemisphere 9.2
1938 Female, age 85, left hemisphere 8.5
2686 Male, age 75, right hemisphere 3.5
Hippocampus, CA1
nTPM: 8.9
2527 Male, age 74, both hemispheres 11.9
2749 Male, age 80, left hemisphere 11.6
2045 Male, age 76, both hemispheres 9.4
1873 Female, age 85, both hemispheres 6.6
2082 Female, age 91, right hemisphere 4.9
Hippocampus, CA2
nTPM: 8.1
1892 Male, age 76, both hemispheres 14.0
1963 Male, age 80, left hemisphere 12.2
1940 Female, age 85, left hemisphere 7.9
2249 Male, age 74, both hemispheres 6.0
2113 Female, age 91, right hemisphere 4.4
2437 Female, age 94, left hemisphere 4.4
Hippocampus, CA3
nTPM: 8.3
2436 Male, age 74, both hemispheres 18.6
1867 Male, age 76, both hemispheres 14.7
1891 Female, age 85, both hemispheres 7.9
2137 Male, age 80, left hemisphere 5.1
2620 Female, age 94, left hemisphere 2.3
2861 Female, age 67, both hemispheres 1.1
Parahippocampal cortex
nTPM: 6.1
1850 Male, age 80, both hemispheres 12.4
1990 Female, age 91, right hemisphere 10.7
1933 Female, age 85, both hemispheres 8.6
2250 Female, age 67, right hemisphere 7.0
2245 Female, age 91, both hemispheres 6.3
2692 Male, age 74, both hemispheres 4.4
2532 Female, age 72, left hemisphere 4.2
2622 Female, age 67, right hemisphere 3.7
2693 Female, age 94, both hemispheres 2.3
2018 Male, age 76, both hemispheres 1.5
Perirhinal gyrus
nTPM: 11.8
2521 Female, age 94, right hemisphere 17.0
1794 Male, age 80, right hemisphere 14.5
1847 Female, age 91, left hemisphere 14.3
1841 Female, age 85, right hemisphere 8.2
2848 Male, age 76, right hemisphere 5.0
Subiculum
nTPM: 7.6
2438 Female, age 94, left hemisphere 10.3
1901 Male, age 80, both hemispheres 9.1
1977 Female, age 85, both hemispheres 8.6
2619 Male, age 74, both hemispheres 8.0
2729 Female, age 91, right hemisphere 6.8
2042 Male, age 76, both hemispheres 2.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.2
Samples: 197

Max nTPM: 35.0
Min nTPM: 8.8
Std nTPM: 5.2
Median nTPM: 20.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 35.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 34.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 34.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 33.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 32.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 31.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 31.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 30.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 30.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 29.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 29.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.7
FF:10169-103B7 60 years, female 39.4
FF:10153-102I9 76 years, female 35.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.3
Pig sample Sample description nTPM
Subiculum
nTPM: 26.7
Samples: 4

Max nTPM: 33.2
Min nTPM: 22.8
Sample A Female 33.2
Sample B Female 25.8
Sample C Male 25.1
Sample D Male 22.8
Dorsal hippocampus
nTPM: 26.2
Samples: 4

Max nTPM: 33.5
Min nTPM: 19.0
Sample A Female 33.5
Sample B Female 25.6
Sample C Male 26.5
Sample D Male 19.0
Entorhinal cortex
nTPM: 25.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 21.3
Sample A Female 23.8
Sample B Female 28.5
Sample C Male 27.8
Sample D Male 21.3
Ventral hippocampus
nTPM: 27.3
Samples: 4

Max nTPM: 35.2
Min nTPM: 21.1
Sample A Female 27.8
Sample B Female 21.1
Sample C Male 35.2
Sample D Male 24.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 64.5
Samples: 4

Max nTPM: 67.1
Min nTPM: 60.4
Sample A Male 64.6
Sample B Male 65.7
Sample C Female 67.1
Sample D Female 60.4
Hippocampal formation
nTPM: 68.1
Samples: 4

Max nTPM: 71.8
Min nTPM: 64.8
Sample A Male 70.3
Sample B Male 65.3
Sample C Female 71.8
Sample D Female 64.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
74357590 Antisense, RP_060117_01_A06, Mouse strain C57BL/6J (56 days, male) 4.3

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