MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.1 nTPM
HPA Brain:79.8 nTPM
GTEx:38.1 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:123.8 nTPM
Mouse:44.6 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.7
2586 Male, age 75, left hemisphere 82.3
2828 Female, age 72, unknown 81.5
2219 Male, age 76, both hemispheres 75.3
1827 Male, age 72, unknown 70.9
2666 Male, age 74, left hemisphere 66.0
1833 Male, age 53, unknown 62.0
1870 Female, age 42, unknown 58.8
2411 Female, age 72, unknown 54.0
2019 Male, age 18, unknown 53.9
1830 Male, age 51, unknown 51.9
Dorsal raphe nucleus
nTPM: 72.9
2016 Female, age 72, unknown 82.4
1828 Male, age 53, unknown 79.3
2298 Female, age 72, unknown 77.7
2047 Male, age 72, unknown 76.7
2750 Male, age 76, both hemispheres 48.6
Inferior colliculus
nTPM: 79.1
2849 Male, age 72, unknown 89.4
1848 Female, age 42, unknown 82.8
1890 Male, age 53, unknown 72.9
2097 Female, age 72, unknown 71.2
Median raphe nucleus
nTPM: 54.8
2220 Male, age 76, midline 54.8
Periaquaductal grey, anterior
nTPM: 75.2
2502 Female, age 75, unknown 77.5
1795 Male, age 51, unknown 77.4
1947 Male, age 18, unknown 70.8
Periaquaductal grey, dorsal
nTPM: 79.8
1840 Male, age 53, unknown 95.1
2850 Male, age 76, both hemispheres 75.9
2464 Female, age 72, unknown 75.8
1831 Male, age 72, unknown 72.6
Periaquaductal grey, lateral
nTPM: 68.8
2053 Male, age 18, unknown 73.7
2140 Male, age 76, both hemispheres 72.6
2272 Male, age 74, both hemispheres 60.1
Pretectal area
nTPM: 72.4
1816 Male, age 51, unknown 80.0
2667 Female, age 75, unknown 79.6
1817 Female, age 42, unknown 78.9
2825 Male, age 18, unknown 78.6
1944 Female, age 72, unknown 74.4
2224 Female, age 72, unknown 73.6
2273 Male, age 74, both hemispheres 71.0
1815 Male, age 53, unknown 67.5
2007 Male, age 72, unknown 67.4
2407 Male, age 75, both hemispheres 66.4
2316 Male, age 76, right hemisphere 59.4
Red nucleus
nTPM: 59.4
2588 Male, age 74, left hemisphere 70.0
2503 Female, age 72, unknown 67.9
1954 Female, age 42, unknown 62.1
2725 Female, age 75, unknown 61.9
2769 Male, age 72, unknown 61.7
1821 Female, age 72, unknown 59.7
2227 Male, age 72, unknown 59.7
2823 Male, age 76, right hemisphere 57.2
1865 Male, age 51, unknown 53.6
1904 Male, age 53, unknown 53.4
2584 Male, age 75, left hemisphere 53.2
2785 Male, age 18, unknown 52.2
Substantia nigra
nTPM: 65.3
2699 Male, age 18, unknown 78.9
1916 Female, age 42, unknown 74.1
2665 Male, age 74, both hemispheres 72.8
1889 Female, age 72, unknown 67.5
2241 Male, age 72, unknown 64.7
1851 Male, age 51, unknown 62.1
1941 Male, age 53, unknown 62.1
2409 Female, age 72, unknown 58.6
2583 Male, age 75, right hemisphere 56.3
2590 Female, age 75, unknown 56.2
Superior colliculus
nTPM: 71.4
2664 Male, age 75, both hemispheres 111.7
1839 Male, age 51, unknown 78.9
2087 Female, age 72, unknown 72.4
2261 Male, age 18, unknown 70.9
1796 Male, age 53, unknown 69.8
2668 Female, age 75, unknown 67.9
2587 Male, age 74, left hemisphere 67.3
1895 Male, age 76, right hemisphere 64.6
1995 Male, age 72, unknown 58.6
1913 Female, age 42, unknown 51.5
Ventral tegmental area
nTPM: 60.2
1942 Male, age 51, unknown 66.8
1915 Female, age 42, unknown 64.3
2021 Male, age 53, unknown 63.0
2410 Female, age 72, unknown 62.4
2218 Male, age 76, both hemispheres 61.1
2223 Female, age 72, unknown 43.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.1
Samples: 139

Max nTPM: 80.0
Min nTPM: 12.9
Std nTPM: 13.2
Median nTPM: 37.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 80.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 78.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 72.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 69.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 65.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 65.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 61.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 58.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 57.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 57.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 123.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.0
Samples: 4

Max nTPM: 108.9
Min nTPM: 79.3
Sample A Female 108.9
Sample B Female 79.3
Sample C Male 107.6
Sample D Male 100.2
Midbrain
nTPM: 119.5
Samples: 4

Max nTPM: 157.4
Min nTPM: 87.7
Sample A Female 157.4
Sample B Female 87.7
Sample C Male 126.4
Sample D Male 106.4
Periaqueductal gray
nTPM: 123.8
Samples: 3

Max nTPM: 137.4
Min nTPM: 108.3
Sample B Female 108.3
Sample C Male 137.4
Sample D Male 125.7
Superior colliculi
nTPM: 98.5
Samples: 4

Max nTPM: 114.9
Min nTPM: 58.7
Sample A Female 107.7
Sample B Female 58.7
Sample C Male 114.9
Sample D Male 112.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 47.3
Min nTPM: 42.0
Sample A Male 47.3
Sample B Male 44.9
Sample C Female 42.0
Sample D Female 44.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69290435 Antisense, RP_050407_03_H12, Mouse strain C57BL/6J (56 days, male) 1.2

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