HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:56.6 nTPM
GTEx:5.2 nTPM
FANTOM5:10.7 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:25.3 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039483Antibody HPA042188
Glial cells Not detectedLow
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Hippocampus
nTPM: 50.1
1911 Female, age 85, right hemisphere 63.5
2529 Female, age 94, left hemisphere 48.8
2148 Female, age 91, left hemisphere 48.7
1898 Male, age 80, left hemisphere 47.8
2621 Female, age 67, right hemisphere 47.7
1855 Male, age 76, left hemisphere 44.0
Dentate gyrus
nTPM: 56.6
2530 Female, age 94, left hemisphere 72.0
2528 Male, age 74, both hemispheres 59.7
2010 Male, age 76, both hemispheres 59.3
2246 Female, age 85, both hemispheres 56.5
2531 Female, age 67, both hemispheres 53.8
1927 Female, age 91, both hemispheres 37.9
Entorhinal gyrus
nTPM: 44.9
2117 Female, age 91, right hemisphere 63.6
2764 Male, age 80, right hemisphere 53.0
1787 Male, age 76, left hemisphere 43.5
1938 Female, age 85, left hemisphere 37.7
2613 Female, age 94, left hemisphere 35.9
2686 Male, age 75, right hemisphere 35.5
Hippocampus, CA1
nTPM: 47.8
2082 Female, age 91, right hemisphere 66.0
1873 Female, age 85, both hemispheres 52.5
2527 Male, age 74, both hemispheres 45.7
2045 Male, age 76, both hemispheres 44.7
2749 Male, age 80, left hemisphere 30.3
Hippocampus, CA2
nTPM: 51.8
2249 Male, age 74, both hemispheres 68.3
1940 Female, age 85, left hemisphere 58.4
2113 Female, age 91, right hemisphere 57.5
1963 Male, age 80, left hemisphere 46.8
2437 Female, age 94, left hemisphere 43.2
1892 Male, age 76, both hemispheres 36.7
Hippocampus, CA3
nTPM: 55.2
2436 Male, age 74, both hemispheres 78.3
1891 Female, age 85, both hemispheres 74.1
2620 Female, age 94, left hemisphere 64.0
1867 Male, age 76, both hemispheres 50.9
2861 Female, age 67, both hemispheres 33.8
2137 Male, age 80, left hemisphere 30.3
Parahippocampal cortex
nTPM: 39.9
2532 Female, age 72, left hemisphere 53.3
2692 Male, age 74, both hemispheres 51.8
1990 Female, age 91, right hemisphere 48.6
2018 Male, age 76, both hemispheres 41.0
1933 Female, age 85, both hemispheres 40.0
1850 Male, age 80, both hemispheres 39.2
2245 Female, age 91, both hemispheres 35.7
2250 Female, age 67, right hemisphere 34.7
2622 Female, age 67, right hemisphere 28.1
2693 Female, age 94, both hemispheres 26.8
Perirhinal gyrus
nTPM: 36.2
2521 Female, age 94, right hemisphere 43.5
1794 Male, age 80, right hemisphere 40.7
2848 Male, age 76, right hemisphere 36.8
1841 Female, age 85, right hemisphere 32.0
1847 Female, age 91, left hemisphere 28.0
Subiculum
nTPM: 55.7
2042 Male, age 76, both hemispheres 80.1
1901 Male, age 80, both hemispheres 62.4
1977 Female, age 85, both hemispheres 56.6
2729 Female, age 91, right hemisphere 54.9
2619 Male, age 74, both hemispheres 46.5
2438 Female, age 94, left hemisphere 34.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 5.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.2
Samples: 197

Max nTPM: 16.5
Min nTPM: 0.5
Std nTPM: 3.4
Median nTPM: 4.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 16.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 15.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 15.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 15.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 15.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 14.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 14.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 13.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 13.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 12.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 12.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.7
FF:10153-102I9 76 years, female 12.0
FF:10169-103B7 60 years, female 9.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Subiculum
nTPM: 12.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.1
Sample A Female 14.2
Sample B Female 13.6
Sample C Male 11.1
Sample D Male 11.7
Dorsal hippocampus
nTPM: 22.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 19.4
Sample A Female 23.6
Sample B Female 22.6
Sample C Male 19.4
Sample D Male 25.3
Entorhinal cortex
nTPM: 16.4
Samples: 4

Max nTPM: 21.4
Min nTPM: 13.9
Sample A Female 14.3
Sample B Female 21.4
Sample C Male 13.9
Sample D Male 16.0
Ventral hippocampus
nTPM: 18.1
Samples: 4

Max nTPM: 20.9
Min nTPM: 15.9
Sample A Female 17.4
Sample B Female 18.0
Sample C Male 15.9
Sample D Male 20.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.4
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.2
Sample A Male 24.1
Sample B Male 22.5
Sample C Female 22.6
Sample D Female 20.2
Hippocampal formation
nTPM: 25.3
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.9
Sample A Male 24.3
Sample B Male 23.9
Sample C Female 27.7
Sample D Female 25.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68196911 Antisense, RP_041116_01_D04, Mouse strain C57BL/6J (56 days, male) 0.4

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