MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:101.9 nTPM
HPA Brain:126.4 nTPM
GTEx:101.9 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:45.2 nTPM
Mouse:140.0 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.2
2411 Female, age 72, unknown 137.3
1830 Male, age 51, unknown 131.3
1833 Male, age 53, unknown 120.2
2019 Male, age 18, unknown 117.5
1870 Female, age 42, unknown 112.9
2828 Female, age 72, unknown 79.0
1827 Male, age 72, unknown 62.6
2219 Male, age 76, both hemispheres 57.7
2586 Male, age 75, left hemisphere 47.2
2666 Male, age 74, left hemisphere 46.3
Dorsal raphe nucleus
nTPM: 74.4
2750 Male, age 76, both hemispheres 148.6
2016 Female, age 72, unknown 68.7
1828 Male, age 53, unknown 67.7
2298 Female, age 72, unknown 45.4
2047 Male, age 72, unknown 41.8
Inferior colliculus
nTPM: 56.4
2849 Male, age 72, unknown 60.9
1848 Female, age 42, unknown 59.1
1890 Male, age 53, unknown 58.9
2097 Female, age 72, unknown 46.8
Median raphe nucleus
nTPM: 77.4
2220 Male, age 76, midline 77.4
Periaquaductal grey, anterior
nTPM: 44.5
2502 Female, age 75, unknown 50.0
1947 Male, age 18, unknown 47.2
1795 Male, age 51, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 43.5
2464 Female, age 72, unknown 60.0
1831 Male, age 72, unknown 45.0
2850 Male, age 76, both hemispheres 44.0
1840 Male, age 53, unknown 25.2
Periaquaductal grey, lateral
nTPM: 53.9
2272 Male, age 74, both hemispheres 70.4
2053 Male, age 18, unknown 53.4
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 58.5
1815 Male, age 53, unknown 79.7
2316 Male, age 76, right hemisphere 79.7
2273 Male, age 74, both hemispheres 71.9
1817 Female, age 42, unknown 64.0
2407 Male, age 75, both hemispheres 62.4
2667 Female, age 75, unknown 59.1
2007 Male, age 72, unknown 58.5
2825 Male, age 18, unknown 55.4
2224 Female, age 72, unknown 55.0
1944 Female, age 72, unknown 28.8
1816 Male, age 51, unknown 28.7
Red nucleus
nTPM: 126.4
2823 Male, age 76, right hemisphere 161.9
1865 Male, age 51, unknown 161.1
1821 Female, age 72, unknown 159.9
1904 Male, age 53, unknown 150.5
2227 Male, age 72, unknown 143.7
2769 Male, age 72, unknown 139.1
2785 Male, age 18, unknown 125.5
1954 Female, age 42, unknown 124.9
2503 Female, age 72, unknown 118.5
2588 Male, age 74, left hemisphere 92.5
2725 Female, age 75, unknown 71.8
2584 Male, age 75, left hemisphere 67.0
Substantia nigra
nTPM: 60.3
1851 Male, age 51, unknown 79.2
1889 Female, age 72, unknown 75.1
2583 Male, age 75, right hemisphere 74.4
2590 Female, age 75, unknown 70.5
2699 Male, age 18, unknown 64.3
1916 Female, age 42, unknown 55.7
2409 Female, age 72, unknown 55.3
1941 Male, age 53, unknown 53.5
2241 Male, age 72, unknown 41.1
2665 Male, age 74, both hemispheres 34.1
Superior colliculus
nTPM: 71.7
1995 Male, age 72, unknown 121.2
1913 Female, age 42, unknown 109.6
2587 Male, age 74, left hemisphere 86.4
2668 Female, age 75, unknown 77.9
1895 Male, age 76, right hemisphere 75.3
1839 Male, age 51, unknown 74.5
1796 Male, age 53, unknown 54.8
2664 Male, age 75, both hemispheres 41.5
2261 Male, age 18, unknown 38.5
2087 Female, age 72, unknown 37.4
Ventral tegmental area
nTPM: 88.2
2223 Female, age 72, unknown 155.8
2410 Female, age 72, unknown 111.9
2218 Male, age 76, both hemispheres 76.4
2021 Male, age 53, unknown 66.3
1942 Male, age 51, unknown 61.0
1915 Female, age 42, unknown 57.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 101.9
GTEx sample id Sample description nTPM
61.083.2125.726.8219.0050100150200250300350
Brain - Substantia nigra
Average nTPM: 101.9
Samples: 139

Max nTPM: 367.8
Min nTPM: 26.8
Std nTPM: 62.5
Median nTPM: 83.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 367.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 328.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 324.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 299.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 256.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 247.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 229.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 225.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 219.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 192.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 190.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.6
FF:10158-103A5 76 years, female 63.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.2
Pig sample Sample description nTPM
33.539.549.128.864.2051015202530354045505560
 		Substantia nigra
nTPM: 43.0
Samples: 4

Max nTPM: 64.2
Min nTPM: 28.8
Sample A Female 44.1
Sample B Female 28.8
Sample C Male 35.0
Sample D Male 64.2
22.332.655.522.293.30102030405060708090
 		Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 93.3
Min nTPM: 22.2
Sample A Female 93.3
Sample B Female 42.9
Sample C Male 22.3
Sample D Male 22.2
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 34.8
Min nTPM: 26.4
Sample B Female 34.8
Sample C Male 26.4
Sample D Male 26.8
33.138.939.238.839.905101520253035
 		Superior colliculi
nTPM: 33.5
Samples: 4

Max nTPM: 39.9
Min nTPM: 16.1
Sample A Female 39.9
Sample B Female 16.1
Sample C Male 39.0
Sample D Male 38.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.0
Mouse sample Sample description nTPM
138.1144.9146.8143.8149.6020406080100120140
 		Midbrain
nTPM: 140.0
Samples: 4

Max nTPM: 149.6
Min nTPM: 120.8
Sample A Male 143.8
Sample B Male 120.8
Sample C Female 145.9
Sample D Female 149.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69113692 Antisense, RP_050316_02_F01, Mouse strain C57BL/6J (56 days, male) 2.5

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