MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.4 nTPM
HPA Brain:16.9 nTPM
GTEx:12.4 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:5.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2586 Male, age 75, left hemisphere 22.4
2019 Male, age 18, unknown 18.0
2828 Female, age 72, unknown 17.3
2411 Female, age 72, unknown 17.1
2219 Male, age 76, both hemispheres 16.5
1830 Male, age 51, unknown 15.8
1833 Male, age 53, unknown 15.8
1827 Male, age 72, unknown 15.1
1870 Female, age 42, unknown 14.3
2666 Male, age 74, left hemisphere 14.0
Dorsal raphe nucleus
nTPM: 14.6
1828 Male, age 53, unknown 15.2
2750 Male, age 76, both hemispheres 14.8
2047 Male, age 72, unknown 14.5
2298 Female, age 72, unknown 14.3
2016 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 12.4
1890 Male, age 53, unknown 13.8
2849 Male, age 72, unknown 12.5
2097 Female, age 72, unknown 11.7
1848 Female, age 42, unknown 11.6
Median raphe nucleus
nTPM: 12.6
2220 Male, age 76, midline 12.6
Periaquaductal grey, anterior
nTPM: 16.0
2502 Female, age 75, unknown 17.1
1795 Male, age 51, unknown 16.3
1947 Male, age 18, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 12.9
2850 Male, age 76, both hemispheres 13.5
2464 Female, age 72, unknown 13.3
1831 Male, age 72, unknown 12.9
1840 Male, age 53, unknown 11.8
Periaquaductal grey, lateral
nTPM: 13.6
2272 Male, age 74, both hemispheres 14.5
2140 Male, age 76, both hemispheres 13.4
2053 Male, age 18, unknown 13.0
Pretectal area
nTPM: 14.8
2007 Male, age 72, unknown 17.1
1815 Male, age 53, unknown 16.0
2667 Female, age 75, unknown 16.0
1816 Male, age 51, unknown 15.5
1817 Female, age 42, unknown 15.5
2407 Male, age 75, both hemispheres 15.3
2316 Male, age 76, right hemisphere 14.6
1944 Female, age 72, unknown 14.3
2273 Male, age 74, both hemispheres 13.6
2825 Male, age 18, unknown 13.3
2224 Female, age 72, unknown 11.9
Red nucleus
nTPM: 16.9
2584 Male, age 75, left hemisphere 19.5
2785 Male, age 18, unknown 18.2
2588 Male, age 74, left hemisphere 17.8
1904 Male, age 53, unknown 17.4
2769 Male, age 72, unknown 17.4
1865 Male, age 51, unknown 17.1
2503 Female, age 72, unknown 16.5
2227 Male, age 72, unknown 16.3
2725 Female, age 75, unknown 16.1
2823 Male, age 76, right hemisphere 15.5
1821 Female, age 72, unknown 15.4
1954 Female, age 42, unknown 14.9
Substantia nigra
nTPM: 16.7
1916 Female, age 42, unknown 21.8
1851 Male, age 51, unknown 18.3
2699 Male, age 18, unknown 18.0
2583 Male, age 75, right hemisphere 17.3
2665 Male, age 74, both hemispheres 17.1
2409 Female, age 72, unknown 16.0
2590 Female, age 75, unknown 15.2
1889 Female, age 72, unknown 14.9
1941 Male, age 53, unknown 14.2
2241 Male, age 72, unknown 14.0
Superior colliculus
nTPM: 15.2
2664 Male, age 75, both hemispheres 19.3
1995 Male, age 72, unknown 16.6
1913 Female, age 42, unknown 16.4
1796 Male, age 53, unknown 16.2
2087 Female, age 72, unknown 15.4
2261 Male, age 18, unknown 15.0
2668 Female, age 75, unknown 14.7
1839 Male, age 51, unknown 13.4
2587 Male, age 74, left hemisphere 12.9
1895 Male, age 76, right hemisphere 12.5
Ventral tegmental area
nTPM: 15.8
2410 Female, age 72, unknown 18.0
1915 Female, age 42, unknown 15.7
2223 Female, age 72, unknown 15.7
1942 Male, age 51, unknown 15.3
2021 Male, age 53, unknown 15.1
2218 Male, age 76, both hemispheres 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.4
Samples: 139

Max nTPM: 22.3
Min nTPM: 6.4
Std nTPM: 2.8
Median nTPM: 12.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 22.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 19.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 19.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 19.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 18.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 17.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 16.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.3
FF:10158-103A5 76 years, female 12.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.7
Sample A Female 8.6
Sample B Female 7.8
Sample C Male 7.7
Sample D Male 7.9
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 5.6
Sample A Female 11.3
Sample B Female 7.2
Sample C Male 6.5
Sample D Male 5.6
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.2
Min nTPM: 5.7
Sample B Female 7.1
Sample C Male 7.2
Sample D Male 5.7
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.1
Sample A Female 7.7
Sample B Female 6.1
Sample C Male 7.5
Sample D Male 7.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.7
Sample A Male 6.6
Sample B Male 4.7
Sample C Female 4.9
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69013116 Antisense, RP_050309_02_A07, Mouse strain C57BL/6J (56 days, male) 0.1

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