MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:45.7 nTPM
GTEx:31.2 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:58.2 nTPM
Mouse:75.9 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
2586 Male, age 75, left hemisphere 54.6
2019 Male, age 18, unknown 49.4
2411 Female, age 72, unknown 47.1
2666 Male, age 74, left hemisphere 47.1
2828 Female, age 72, unknown 44.0
1833 Male, age 53, unknown 43.2
1870 Female, age 42, unknown 40.2
1830 Male, age 51, unknown 39.3
2219 Male, age 76, both hemispheres 37.1
1827 Male, age 72, unknown 36.4
Dorsal raphe nucleus
nTPM: 41.0
2750 Male, age 76, both hemispheres 48.6
2298 Female, age 72, unknown 41.9
2047 Male, age 72, unknown 40.9
1828 Male, age 53, unknown 39.4
2016 Female, age 72, unknown 34.0
Inferior colliculus
nTPM: 30.0
1890 Male, age 53, unknown 32.6
2097 Female, age 72, unknown 31.1
1848 Female, age 42, unknown 29.3
2849 Male, age 72, unknown 27.2
Median raphe nucleus
nTPM: 40.9
2220 Male, age 76, midline 40.9
Periaquaductal grey, anterior
nTPM: 34.1
1795 Male, age 51, unknown 34.6
1947 Male, age 18, unknown 33.9
2502 Female, age 75, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 30.0
1831 Male, age 72, unknown 35.2
2464 Female, age 72, unknown 33.4
2850 Male, age 76, both hemispheres 27.5
1840 Male, age 53, unknown 23.8
Periaquaductal grey, lateral
nTPM: 28.7
2053 Male, age 18, unknown 31.3
2272 Male, age 74, both hemispheres 29.4
2140 Male, age 76, both hemispheres 25.3
Pretectal area
nTPM: 39.5
1817 Female, age 42, unknown 51.9
1816 Male, age 51, unknown 47.4
1815 Male, age 53, unknown 46.0
2007 Male, age 72, unknown 44.4
1944 Female, age 72, unknown 43.9
2667 Female, age 75, unknown 39.6
2407 Male, age 75, both hemispheres 34.3
2224 Female, age 72, unknown 34.2
2273 Male, age 74, both hemispheres 31.4
2316 Male, age 76, right hemisphere 31.2
2825 Male, age 18, unknown 30.2
Red nucleus
nTPM: 44.3
1904 Male, age 53, unknown 52.2
1821 Female, age 72, unknown 48.5
2785 Male, age 18, unknown 48.5
1865 Male, age 51, unknown 47.1
2503 Female, age 72, unknown 43.6
2769 Male, age 72, unknown 43.3
2584 Male, age 75, left hemisphere 42.5
1954 Female, age 42, unknown 42.4
2588 Male, age 74, left hemisphere 42.4
2227 Male, age 72, unknown 41.9
2823 Male, age 76, right hemisphere 41.9
2725 Female, age 75, unknown 37.6
Substantia nigra
nTPM: 45.7
1916 Female, age 42, unknown 59.5
1851 Male, age 51, unknown 55.0
2409 Female, age 72, unknown 49.4
2583 Male, age 75, right hemisphere 48.3
1889 Female, age 72, unknown 45.1
2699 Male, age 18, unknown 42.7
1941 Male, age 53, unknown 42.6
2241 Male, age 72, unknown 42.0
2590 Female, age 75, unknown 36.3
2665 Male, age 74, both hemispheres 35.5
Superior colliculus
nTPM: 40.7
2668 Female, age 75, unknown 57.8
2087 Female, age 72, unknown 45.3
1995 Male, age 72, unknown 44.6
1913 Female, age 42, unknown 44.2
1796 Male, age 53, unknown 42.2
2261 Male, age 18, unknown 40.1
2664 Male, age 75, both hemispheres 34.6
2587 Male, age 74, left hemisphere 34.5
1895 Male, age 76, right hemisphere 32.3
1839 Male, age 51, unknown 31.6
Ventral tegmental area
nTPM: 44.0
2410 Female, age 72, unknown 54.6
1915 Female, age 42, unknown 46.2
2218 Male, age 76, both hemispheres 44.5
2223 Female, age 72, unknown 43.6
1942 Male, age 51, unknown 38.0
2021 Male, age 53, unknown 37.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 139

Max nTPM: 56.1
Min nTPM: 13.8
Std nTPM: 7.4
Median nTPM: 30.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 50.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 49.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 47.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 47.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 45.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 44.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.3
FF:10158-103A5 76 years, female 78.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.5
Samples: 4

Max nTPM: 59.4
Min nTPM: 34.6
Sample A Female 57.6
Sample B Female 34.6
Sample C Male 46.3
Sample D Male 59.4
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 105.9
Min nTPM: 37.0
Sample A Female 105.9
Sample B Female 40.6
Sample C Male 49.4
Sample D Male 37.0
Periaqueductal gray
nTPM: 31.0
Samples: 3

Max nTPM: 34.9
Min nTPM: 28.7
Sample B Female 34.9
Sample C Male 29.5
Sample D Male 28.7
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 63.8
Min nTPM: 44.7
Sample A Female 63.8
Sample B Female 44.7
Sample C Male 56.7
Sample D Male 54.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 78.1
Min nTPM: 74.5
Sample A Male 75.0
Sample B Male 75.9
Sample C Female 74.5
Sample D Female 78.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
67881552 Antisense, RP_041018_01_E09, Mouse strain C57BL/6J (56 days, male) 11.1
75694482 Antisense, RP_060518_03_G11, Mouse strain C57BL/6J (56 days, male) 3.3
77413684 Antisense, RP_070205_01_C09, Mouse strain C57BL/6J (56 days, male) 2.0

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