MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.3 nTPM
HPA Brain:182.9 nTPM
GTEx:83.3 nTPM
FANTOM5:138.4 Scaled Tags Per Million
Pig:143.8 nTPM
Mouse:197.7 nTPM
Allen mouse:19.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 182.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 173.1
2586 Male, age 75, left hemisphere 208.2
2411 Female, age 72, unknown 197.5
2019 Male, age 18, unknown 171.0
2666 Male, age 74, left hemisphere 171.0
1827 Male, age 72, unknown 169.5
2828 Female, age 72, unknown 168.9
1870 Female, age 42, unknown 168.3
2219 Male, age 76, both hemispheres 162.5
1833 Male, age 53, unknown 160.6
1830 Male, age 51, unknown 153.4
Dorsal raphe nucleus
nTPM: 155.6
2750 Male, age 76, both hemispheres 190.0
2298 Female, age 72, unknown 163.2
2047 Male, age 72, unknown 154.4
1828 Male, age 53, unknown 144.5
2016 Female, age 72, unknown 125.8
Inferior colliculus
nTPM: 134.8
1848 Female, age 42, unknown 138.7
1890 Male, age 53, unknown 137.8
2097 Female, age 72, unknown 136.8
2849 Male, age 72, unknown 125.7
Median raphe nucleus
nTPM: 164.0
2220 Male, age 76, midline 164.0
Periaquaductal grey, anterior
nTPM: 159.1
1947 Male, age 18, unknown 170.3
1795 Male, age 51, unknown 159.6
2502 Female, age 75, unknown 147.3
Periaquaductal grey, dorsal
nTPM: 121.8
2464 Female, age 72, unknown 133.1
1831 Male, age 72, unknown 129.0
1840 Male, age 53, unknown 119.3
2850 Male, age 76, both hemispheres 105.6
Periaquaductal grey, lateral
nTPM: 123.4
2053 Male, age 18, unknown 137.7
2272 Male, age 74, both hemispheres 132.7
2140 Male, age 76, both hemispheres 99.9
Pretectal area
nTPM: 162.5
2007 Male, age 72, unknown 193.8
1816 Male, age 51, unknown 187.0
1815 Male, age 53, unknown 183.6
1817 Female, age 42, unknown 182.8
2407 Male, age 75, both hemispheres 172.0
1944 Female, age 72, unknown 171.9
2667 Female, age 75, unknown 158.7
2825 Male, age 18, unknown 146.4
2316 Male, age 76, right hemisphere 131.7
2224 Female, age 72, unknown 131.4
2273 Male, age 74, both hemispheres 128.2
Red nucleus
nTPM: 180.1
1821 Female, age 72, unknown 207.2
2588 Male, age 74, left hemisphere 194.3
1865 Male, age 51, unknown 188.3
1904 Male, age 53, unknown 188.2
2503 Female, age 72, unknown 187.4
2584 Male, age 75, left hemisphere 183.4
2769 Male, age 72, unknown 182.9
2785 Male, age 18, unknown 181.1
2227 Male, age 72, unknown 172.8
1954 Female, age 42, unknown 166.7
2823 Male, age 76, right hemisphere 163.5
2725 Female, age 75, unknown 144.9
Substantia nigra
nTPM: 182.9
1916 Female, age 42, unknown 223.6
1851 Male, age 51, unknown 214.9
1941 Male, age 53, unknown 201.8
2583 Male, age 75, right hemisphere 200.1
1889 Female, age 72, unknown 180.7
2409 Female, age 72, unknown 171.5
2590 Female, age 75, unknown 164.1
2241 Male, age 72, unknown 162.7
2699 Male, age 18, unknown 160.6
2665 Male, age 74, both hemispheres 149.0
Superior colliculus
nTPM: 169.4
2668 Female, age 75, unknown 250.0
1796 Male, age 53, unknown 174.9
2261 Male, age 18, unknown 171.6
1913 Female, age 42, unknown 168.4
2087 Female, age 72, unknown 161.2
1995 Male, age 72, unknown 161.1
2587 Male, age 74, left hemisphere 160.4
2664 Male, age 75, both hemispheres 157.0
1895 Male, age 76, right hemisphere 146.2
1839 Male, age 51, unknown 143.6
Ventral tegmental area
nTPM: 175.1
2410 Female, age 72, unknown 226.6
1915 Female, age 42, unknown 184.7
2218 Male, age 76, both hemispheres 171.5
2223 Female, age 72, unknown 170.4
1942 Male, age 51, unknown 156.0
2021 Male, age 53, unknown 141.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.3
Samples: 139

Max nTPM: 205.5
Min nTPM: 37.8
Std nTPM: 30.7
Median nTPM: 76.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 205.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 178.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 176.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 176.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 169.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 155.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 145.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 136.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 135.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 133.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 131.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.4
FF:10158-103A5 76 years, female 138.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 143.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.9
Samples: 4

Max nTPM: 136.0
Min nTPM: 72.2
Sample A Female 136.0
Sample B Female 72.2
Sample C Male 122.0
Sample D Male 121.3
Midbrain
nTPM: 143.8
Samples: 4

Max nTPM: 236.8
Min nTPM: 101.5
Sample A Female 236.8
Sample B Female 101.5
Sample C Male 125.9
Sample D Male 111.0
Periaqueductal gray
nTPM: 84.2
Samples: 3

Max nTPM: 90.0
Min nTPM: 75.5
Sample B Female 90.0
Sample C Male 87.2
Sample D Male 75.5
Superior colliculi
nTPM: 123.7
Samples: 4

Max nTPM: 145.7
Min nTPM: 78.9
Sample A Female 143.9
Sample B Female 78.9
Sample C Male 145.7
Sample D Male 126.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 197.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 197.7
Samples: 4

Max nTPM: 211.4
Min nTPM: 185.8
Sample A Male 211.4
Sample B Male 186.3
Sample C Female 185.8
Sample D Female 207.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.5
2034 Antisense, RP_Baylor_102631, Mouse strain C57BL/6J (56 days, male) 19.5
2033 Antisense, RP_Baylor_102631, Mouse strain C57BL/6J (56 days, male) 19.1

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