MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA Brain:193.2 nTPM
GTEx:40.6 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:117.4 nTPM
Mouse:318.4 nTPM
Allen mouse:23.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 193.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.9
2666 Male, age 74, left hemisphere 135.9
1827 Male, age 72, unknown 131.9
2219 Male, age 76, both hemispheres 124.5
2411 Female, age 72, unknown 122.4
1870 Female, age 42, unknown 112.1
1833 Male, age 53, unknown 107.6
2828 Female, age 72, unknown 100.8
1830 Male, age 51, unknown 90.9
2586 Male, age 75, left hemisphere 83.8
2019 Male, age 18, unknown 79.3
Dorsal raphe nucleus
nTPM: 132.1
2298 Female, age 72, unknown 178.5
2047 Male, age 72, unknown 158.7
2750 Male, age 76, both hemispheres 127.7
1828 Male, age 53, unknown 110.9
2016 Female, age 72, unknown 84.7
Inferior colliculus
nTPM: 118.0
2849 Male, age 72, unknown 142.5
2097 Female, age 72, unknown 129.1
1848 Female, age 42, unknown 119.0
1890 Male, age 53, unknown 81.5
Median raphe nucleus
nTPM: 193.2
2220 Male, age 76, midline 193.2
Periaquaductal grey, anterior
nTPM: 160.5
2502 Female, age 75, unknown 218.2
1795 Male, age 51, unknown 135.5
1947 Male, age 18, unknown 127.7
Periaquaductal grey, dorsal
nTPM: 126.0
1840 Male, age 53, unknown 166.1
2850 Male, age 76, both hemispheres 132.4
2464 Female, age 72, unknown 112.7
1831 Male, age 72, unknown 92.6
Periaquaductal grey, lateral
nTPM: 102.2
2140 Male, age 76, both hemispheres 125.2
2053 Male, age 18, unknown 110.7
2272 Male, age 74, both hemispheres 70.6
Pretectal area
nTPM: 128.3
2667 Female, age 75, unknown 199.6
2224 Female, age 72, unknown 169.7
1816 Male, age 51, unknown 148.5
1817 Female, age 42, unknown 134.4
1944 Female, age 72, unknown 133.1
2825 Male, age 18, unknown 132.1
2007 Male, age 72, unknown 130.2
1815 Male, age 53, unknown 112.6
2316 Male, age 76, right hemisphere 102.1
2407 Male, age 75, both hemispheres 84.1
2273 Male, age 74, both hemispheres 65.3
Red nucleus
nTPM: 56.5
2584 Male, age 75, left hemisphere 95.2
2785 Male, age 18, unknown 78.1
2769 Male, age 72, unknown 60.4
1821 Female, age 72, unknown 59.4
2227 Male, age 72, unknown 58.6
1954 Female, age 42, unknown 56.1
2588 Male, age 74, left hemisphere 53.3
2823 Male, age 76, right hemisphere 51.1
2503 Female, age 72, unknown 46.6
1904 Male, age 53, unknown 42.9
1865 Male, age 51, unknown 42.2
2725 Female, age 75, unknown 33.5
Substantia nigra
nTPM: 95.9
2665 Male, age 74, both hemispheres 151.5
1916 Female, age 42, unknown 120.3
1941 Male, age 53, unknown 115.1
1889 Female, age 72, unknown 113.4
2241 Male, age 72, unknown 101.0
1851 Male, age 51, unknown 97.6
2409 Female, age 72, unknown 80.1
2699 Male, age 18, unknown 76.6
2590 Female, age 75, unknown 55.0
2583 Male, age 75, right hemisphere 48.3
Superior colliculus
nTPM: 104.0
1839 Male, age 51, unknown 129.8
1796 Male, age 53, unknown 126.9
1895 Male, age 76, right hemisphere 125.8
2668 Female, age 75, unknown 116.5
2261 Male, age 18, unknown 114.1
2087 Female, age 72, unknown 112.5
2664 Male, age 75, both hemispheres 111.7
2587 Male, age 74, left hemisphere 91.0
1913 Female, age 42, unknown 61.9
1995 Male, age 72, unknown 50.1
Ventral tegmental area
nTPM: 115.7
2218 Male, age 76, both hemispheres 132.9
1942 Male, age 51, unknown 119.3
2021 Male, age 53, unknown 119.3
1915 Female, age 42, unknown 117.4
2410 Female, age 72, unknown 105.9
2223 Female, age 72, unknown 99.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 139

Max nTPM: 211.7
Min nTPM: 1.2
Std nTPM: 37.2
Median nTPM: 29.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 211.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 160.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 130.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 126.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 123.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 115.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 114.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 109.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 108.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 105.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 100.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 117.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.1
Samples: 4

Max nTPM: 136.3
Min nTPM: 23.5
Sample A Female 131.0
Sample B Female 61.5
Sample C Male 136.3
Sample D Male 23.5
Midbrain
nTPM: 117.4
Samples: 4

Max nTPM: 194.0
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 76.7
Sample C Male 194.0
Sample D Male 178.9
Periaqueductal gray
nTPM: 107.6
Samples: 3

Max nTPM: 142.8
Min nTPM: 86.0
Sample B Female 86.0
Sample C Male 142.8
Sample D Male 94.0
Superior colliculi
nTPM: 107.7
Samples: 4

Max nTPM: 136.7
Min nTPM: 45.2
Sample A Female 123.9
Sample B Female 45.2
Sample C Male 136.7
Sample D Male 124.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 318.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 318.4
Samples: 4

Max nTPM: 342.2
Min nTPM: 289.2
Sample A Male 289.2
Sample B Male 321.5
Sample C Female 342.2
Sample D Female 320.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.2
73930834 Antisense, RP_051214_04_C09, Mouse strain C57BL/6J (56 days, male) 23.3
70305514 Antisense, RP_050609_04_D06, Mouse strain C57BL/6J (56 days, male) 23.0

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