MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:52.5 nTPM
GTEx:22.6 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:26.4 nTPM
Mouse:26.4 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
2586 Male, age 75, left hemisphere 58.2
2019 Male, age 18, unknown 51.4
1833 Male, age 53, unknown 47.8
2828 Female, age 72, unknown 45.9
1870 Female, age 42, unknown 44.2
2411 Female, age 72, unknown 43.2
1827 Male, age 72, unknown 41.4
2666 Male, age 74, left hemisphere 40.5
1830 Male, age 51, unknown 40.2
2219 Male, age 76, both hemispheres 38.3
Dorsal raphe nucleus
nTPM: 45.0
1828 Male, age 53, unknown 49.0
2047 Male, age 72, unknown 48.7
2016 Female, age 72, unknown 44.8
2750 Male, age 76, both hemispheres 43.6
2298 Female, age 72, unknown 38.9
Inferior colliculus
nTPM: 40.7
2097 Female, age 72, unknown 43.8
1848 Female, age 42, unknown 41.6
1890 Male, age 53, unknown 41.3
2849 Male, age 72, unknown 36.0
Median raphe nucleus
nTPM: 39.4
2220 Male, age 76, midline 39.4
Periaquaductal grey, anterior
nTPM: 42.0
2502 Female, age 75, unknown 46.9
1947 Male, age 18, unknown 40.7
1795 Male, age 51, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 40.9
2464 Female, age 72, unknown 48.6
1840 Male, age 53, unknown 41.3
1831 Male, age 72, unknown 39.3
2850 Male, age 76, both hemispheres 34.5
Periaquaductal grey, lateral
nTPM: 42.7
2053 Male, age 18, unknown 46.1
2140 Male, age 76, both hemispheres 41.8
2272 Male, age 74, both hemispheres 40.2
Pretectal area
nTPM: 43.0
2007 Male, age 72, unknown 45.7
2667 Female, age 75, unknown 45.6
1944 Female, age 72, unknown 44.1
2316 Male, age 76, right hemisphere 43.8
2273 Male, age 74, both hemispheres 43.3
1816 Male, age 51, unknown 42.8
1817 Female, age 42, unknown 42.4
2224 Female, age 72, unknown 42.4
2407 Male, age 75, both hemispheres 42.2
2825 Male, age 18, unknown 40.6
1815 Male, age 53, unknown 40.1
Red nucleus
nTPM: 52.5
1865 Male, age 51, unknown 63.1
2823 Male, age 76, right hemisphere 57.2
2769 Male, age 72, unknown 56.1
1904 Male, age 53, unknown 54.8
2227 Male, age 72, unknown 53.0
1954 Female, age 42, unknown 51.9
1821 Female, age 72, unknown 51.1
2785 Male, age 18, unknown 49.7
2725 Female, age 75, unknown 49.1
2503 Female, age 72, unknown 49.0
2584 Male, age 75, left hemisphere 47.6
2588 Male, age 74, left hemisphere 47.5
Substantia nigra
nTPM: 49.5
2409 Female, age 72, unknown 64.6
2583 Male, age 75, right hemisphere 52.1
2241 Male, age 72, unknown 50.9
2665 Male, age 74, both hemispheres 49.1
1851 Male, age 51, unknown 48.6
2590 Female, age 75, unknown 48.5
1916 Female, age 42, unknown 47.6
2699 Male, age 18, unknown 47.5
1941 Male, age 53, unknown 46.3
1889 Female, age 72, unknown 39.4
Superior colliculus
nTPM: 42.1
2664 Male, age 75, both hemispheres 48.9
2087 Female, age 72, unknown 45.5
1895 Male, age 76, right hemisphere 43.8
1913 Female, age 42, unknown 41.9
1839 Male, age 51, unknown 41.3
2587 Male, age 74, left hemisphere 41.1
1995 Male, age 72, unknown 40.7
2261 Male, age 18, unknown 40.1
1796 Male, age 53, unknown 39.4
2668 Female, age 75, unknown 38.2
Ventral tegmental area
nTPM: 43.4
2223 Female, age 72, unknown 47.2
1942 Male, age 51, unknown 44.8
1915 Female, age 42, unknown 44.7
2410 Female, age 72, unknown 44.0
2021 Male, age 53, unknown 41.4
2218 Male, age 76, both hemispheres 38.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 139

Max nTPM: 40.0
Min nTPM: 15.2
Std nTPM: 4.2
Median nTPM: 21.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 39.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 33.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 31.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 31.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 30.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 30.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 29.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 29.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 32.0
Min nTPM: 16.8
Sample A Female 32.0
Sample B Female 16.8
Sample C Male 26.5
Sample D Male 20.5
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 35.3
Min nTPM: 17.0
Sample A Female 32.3
Sample B Female 17.0
Sample C Male 35.3
Sample D Male 21.0
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 18.5
Min nTPM: 14.6
Sample B Female 15.4
Sample C Male 18.5
Sample D Male 14.6
Superior colliculi
nTPM: 24.4
Samples: 4

Max nTPM: 29.9
Min nTPM: 16.1
Sample A Female 28.3
Sample B Female 16.1
Sample C Male 29.9
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 27.1
Min nTPM: 25.9
Sample A Male 25.9
Sample B Male 27.1
Sample C Female 26.5
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
75042260 Antisense, RP_060412_02_D02, Mouse strain C57BL/6J (56 days, male) 5.8
587438 Antisense, RP_040831_01_G12, Mouse strain C57BL/6J (56 days, male) 3.7

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