MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:161.6 nTPM
HPA Brain:107.6 nTPM
GTEx:161.6 nTPM
FANTOM5:270.4 Scaled Tags Per Million
Pig:120.4 nTPM
Mouse:179.2 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
1870 Female, age 42, unknown 104.6
2411 Female, age 72, unknown 95.1
2019 Male, age 18, unknown 86.5
1827 Male, age 72, unknown 86.4
1833 Male, age 53, unknown 85.4
1830 Male, age 51, unknown 84.8
2828 Female, age 72, unknown 83.5
2219 Male, age 76, both hemispheres 77.7
2666 Male, age 74, left hemisphere 66.4
2586 Male, age 75, left hemisphere 42.5
Dorsal raphe nucleus
nTPM: 97.6
2298 Female, age 72, unknown 120.3
2750 Male, age 76, both hemispheres 100.2
2016 Female, age 72, unknown 96.0
1828 Male, age 53, unknown 89.5
2047 Male, age 72, unknown 82.0
Inferior colliculus
nTPM: 80.9
2097 Female, age 72, unknown 94.0
1890 Male, age 53, unknown 80.9
1848 Female, age 42, unknown 76.6
2849 Male, age 72, unknown 72.0
Median raphe nucleus
nTPM: 107.6
2220 Male, age 76, midline 107.6
Periaquaductal grey, anterior
nTPM: 94.5
1947 Male, age 18, unknown 100.2
2502 Female, age 75, unknown 94.4
1795 Male, age 51, unknown 88.9
Periaquaductal grey, dorsal
nTPM: 90.4
2850 Male, age 76, both hemispheres 130.0
1840 Male, age 53, unknown 87.3
1831 Male, age 72, unknown 76.1
2464 Female, age 72, unknown 68.0
Periaquaductal grey, lateral
nTPM: 106.9
2272 Male, age 74, both hemispheres 122.3
2140 Male, age 76, both hemispheres 112.1
2053 Male, age 18, unknown 86.5
Pretectal area
nTPM: 95.8
2273 Male, age 74, both hemispheres 135.3
2224 Female, age 72, unknown 109.3
2667 Female, age 75, unknown 107.6
1817 Female, age 42, unknown 95.6
1815 Male, age 53, unknown 91.9
2407 Male, age 75, both hemispheres 90.9
2825 Male, age 18, unknown 88.9
2007 Male, age 72, unknown 88.6
1944 Female, age 72, unknown 86.0
2316 Male, age 76, right hemisphere 80.8
1816 Male, age 51, unknown 79.1
Red nucleus
nTPM: 91.1
1865 Male, age 51, unknown 111.0
1904 Male, age 53, unknown 104.7
1821 Female, age 72, unknown 103.4
1954 Female, age 42, unknown 102.4
2503 Female, age 72, unknown 97.1
2785 Male, age 18, unknown 97.0
2725 Female, age 75, unknown 95.2
2769 Male, age 72, unknown 91.3
2227 Male, age 72, unknown 90.7
2823 Male, age 76, right hemisphere 89.9
2584 Male, age 75, left hemisphere 57.1
2588 Male, age 74, left hemisphere 53.0
Substantia nigra
nTPM: 91.9
1916 Female, age 42, unknown 113.9
2241 Male, age 72, unknown 106.4
2409 Female, age 72, unknown 103.0
1851 Male, age 51, unknown 101.0
2699 Male, age 18, unknown 96.7
1889 Female, age 72, unknown 96.1
1941 Male, age 53, unknown 83.6
2590 Female, age 75, unknown 80.4
2665 Male, age 74, both hemispheres 76.4
2583 Male, age 75, right hemisphere 61.4
Superior colliculus
nTPM: 81.8
2587 Male, age 74, left hemisphere 100.9
1995 Male, age 72, unknown 98.0
1913 Female, age 42, unknown 97.8
1796 Male, age 53, unknown 84.4
2087 Female, age 72, unknown 80.2
1895 Male, age 76, right hemisphere 78.7
2261 Male, age 18, unknown 78.1
2668 Female, age 75, unknown 74.7
1839 Male, age 51, unknown 72.3
2664 Male, age 75, both hemispheres 53.0
Ventral tegmental area
nTPM: 92.0
1915 Female, age 42, unknown 105.8
2410 Female, age 72, unknown 96.6
2218 Male, age 76, both hemispheres 90.1
2223 Female, age 72, unknown 88.9
1942 Male, age 51, unknown 87.4
2021 Male, age 53, unknown 83.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.6
Samples: 139

Max nTPM: 309.1
Min nTPM: 88.3
Std nTPM: 45.4
Median nTPM: 146.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 309.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 302.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 292.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 284.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 275.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 265.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 264.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 258.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 249.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 246.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 246.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 270.4
FF:10158-103A5 76 years, female 270.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 120.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.2
Samples: 4

Max nTPM: 147.1
Min nTPM: 104.9
Sample A Female 147.1
Sample B Female 107.3
Sample C Male 113.6
Sample D Male 104.9
Midbrain
nTPM: 120.4
Samples: 4

Max nTPM: 162.7
Min nTPM: 95.8
Sample A Female 162.7
Sample B Female 112.5
Sample C Male 110.6
Sample D Male 95.8
Periaqueductal gray
nTPM: 101.6
Samples: 3

Max nTPM: 112.4
Min nTPM: 90.9
Sample B Female 101.4
Sample C Male 112.4
Sample D Male 90.9
Superior colliculi
nTPM: 119.1
Samples: 4

Max nTPM: 138.0
Min nTPM: 102.5
Sample A Female 138.0
Sample B Female 121.8
Sample C Male 114.2
Sample D Male 102.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 179.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.2
Samples: 4

Max nTPM: 188.7
Min nTPM: 169.2
Sample A Male 181.8
Sample B Male 169.2
Sample C Female 177.0
Sample D Female 188.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
74580984 Antisense, RP_060215_02_C08, Mouse strain C57BL/6J (56 days, male) 10.1

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