MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:9.0 nTPM
GTEx:6.0 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:1.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.5
2666 Male, age 74, left hemisphere 8.5
1870 Female, age 42, unknown 7.2
1830 Male, age 51, unknown 6.9
1833 Male, age 53, unknown 6.8
2019 Male, age 18, unknown 6.8
2828 Female, age 72, unknown 6.6
2411 Female, age 72, unknown 6.3
1827 Male, age 72, unknown 5.7
2219 Male, age 76, both hemispheres 5.4
2586 Male, age 75, left hemisphere 4.3
Dorsal raphe nucleus
nTPM: 8.3
2016 Female, age 72, unknown 10.8
1828 Male, age 53, unknown 8.7
2298 Female, age 72, unknown 7.9
2750 Male, age 76, both hemispheres 7.3
2047 Male, age 72, unknown 6.4
Inferior colliculus
nTPM: 6.0
1890 Male, age 53, unknown 6.8
1848 Female, age 42, unknown 5.9
2849 Male, age 72, unknown 5.8
2097 Female, age 72, unknown 5.7
Median raphe nucleus
nTPM: 6.0
2220 Male, age 76, midline 6.0
Periaquaductal grey, anterior
nTPM: 7.2
1795 Male, age 51, unknown 8.5
1947 Male, age 18, unknown 6.9
2502 Female, age 75, unknown 6.4
Periaquaductal grey, dorsal
nTPM: 8.9
2850 Male, age 76, both hemispheres 10.7
1831 Male, age 72, unknown 9.6
2464 Female, age 72, unknown 7.7
1840 Male, age 53, unknown 7.6
Periaquaductal grey, lateral
nTPM: 9.0
2272 Male, age 74, both hemispheres 10.0
2140 Male, age 76, both hemispheres 9.4
2053 Male, age 18, unknown 7.5
Pretectal area
nTPM: 6.6
2273 Male, age 74, both hemispheres 9.7
2224 Female, age 72, unknown 8.6
2316 Male, age 76, right hemisphere 7.4
2825 Male, age 18, unknown 6.8
1815 Male, age 53, unknown 6.7
1944 Female, age 72, unknown 6.2
2667 Female, age 75, unknown 5.9
2007 Male, age 72, unknown 5.8
1817 Female, age 42, unknown 5.7
2407 Male, age 75, both hemispheres 5.3
1816 Male, age 51, unknown 4.9
Red nucleus
nTPM: 7.0
1904 Male, age 53, unknown 7.7
2823 Male, age 76, right hemisphere 7.7
1865 Male, age 51, unknown 7.6
2227 Male, age 72, unknown 7.4
2769 Male, age 72, unknown 7.3
2503 Female, age 72, unknown 7.1
2725 Female, age 75, unknown 7.1
1821 Female, age 72, unknown 7.0
1954 Female, age 42, unknown 6.9
2785 Male, age 18, unknown 6.6
2588 Male, age 74, left hemisphere 6.1
2584 Male, age 75, left hemisphere 5.6
Substantia nigra
nTPM: 7.4
2699 Male, age 18, unknown 9.2
2590 Female, age 75, unknown 9.0
2409 Female, age 72, unknown 8.9
2665 Male, age 74, both hemispheres 7.9
2241 Male, age 72, unknown 7.0
1941 Male, age 53, unknown 6.9
2583 Male, age 75, right hemisphere 6.9
1851 Male, age 51, unknown 6.8
1916 Female, age 42, unknown 5.9
1889 Female, age 72, unknown 5.3
Superior colliculus
nTPM: 7.0
1995 Male, age 72, unknown 9.7
1913 Female, age 42, unknown 9.2
2587 Male, age 74, left hemisphere 7.6
2668 Female, age 75, unknown 6.9
1839 Male, age 51, unknown 6.6
2087 Female, age 72, unknown 6.6
2261 Male, age 18, unknown 6.5
1895 Male, age 76, right hemisphere 6.4
2664 Male, age 75, both hemispheres 5.8
1796 Male, age 53, unknown 4.7
Ventral tegmental area
nTPM: 7.0
2021 Male, age 53, unknown 8.6
1942 Male, age 51, unknown 7.3
1915 Female, age 42, unknown 6.8
2218 Male, age 76, both hemispheres 6.4
2223 Female, age 72, unknown 6.4
2410 Female, age 72, unknown 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 139

Max nTPM: 13.2
Min nTPM: 2.0
Std nTPM: 2.0
Median nTPM: 5.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 13.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 12.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 11.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 11.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 10.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 10.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 10.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 10.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 9.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 9.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 9.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.7
FF:10158-103A5 76 years, female 14.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 11.4
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 11.4
Sample C Male 6.7
Sample D Male 6.4
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.5
Sample A Female 4.6
Sample B Female 8.2
Sample C Male 4.5
Sample D Male 4.6
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 10.1
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 10.1
Sample D Male 7.5
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 15.8
Min nTPM: 5.4
Sample A Female 5.7
Sample B Female 15.8
Sample C Male 5.4
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.2
Sample A Male 1.5
Sample B Male 1.4
Sample C Female 1.2
Sample D Female 1.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69095976 Antisense, RP_050324_02_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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