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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
97.7
nTPM
FANTOM5:
89.7
Scaled Tags Per Million
Pig:
12.3
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
97.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 66.7
1984
Male, age 76, both hemispheres
73.8
2188
Female, age 91, both hemispheres
68.0
2301
Female, age 85, both hemispheres
62.9
2090
Male, age 80, both hemispheres
62.2
Dorsal cochlear nucleus nTPM: 69.8
2058
Male, age 76, both hemispheres
85.5
2370
Male, age 61, both hemispheres
80.9
2187
Female, age 91, both hemispheres
66.4
2378
Male, age 80, both hemispheres
59.7
2802
Male, age 74, right hemisphere
56.4
Dorsal tegmental nucleus nTPM: 74.6
1936
Male, age 76, left hemisphere
86.9
2358
Male, age 61, both hemispheres
75.3
2326
Male, age 74, both hemispheres
68.7
2083
Male, age 80, both hemispheres
67.7
Dorsolateral tegmental area nTPM: 83.1
2360
Male, age 74, both hemispheres
97.9
2337
Male, age 61, both hemispheres
90.5
2141
Male, age 76, both hemispheres
87.5
2654
Male, age 80, both hemispheres
76.2
2751
Female, age 85, both hemispheres
63.4
Kolliker-Fuse nucleus nTPM: 97.7
2315
Male, age 76, right hemisphere
162.8
2163
Male, age 80, both hemispheres
67.9
2793
Female, age 91, left hemisphere
62.4
Lateral lemniscal nuclei nTPM: 57.7
2746
Female, age 85, left hemisphere
62.9
2453
Male, age 74, right hemisphere
59.0
2320
Female, age 91, left hemisphere
58.7
2036
Male, age 80, both hemispheres
57.6
2169
Male, age 76, both hemispheres
50.3
Lateral parabrachial nucleus nTPM: 92.1
2792
Male, age 76, both hemispheres
118.7
2790
Male, age 61, both hemispheres
101.2
2139
Female, age 85, right hemisphere
83.3
2013
Male, age 80, both hemispheres
65.2
Lateral vestibular nucleus nTPM: 70.2
2184
Male, age 76, both hemispheres
76.6
2311
Male, age 80, both hemispheres
63.9
Locus coeruleus nTPM: 65.1
1980
Male, age 76, both hemispheres
81.8
2788
Male, age 74, unknown
70.0
2123
Female, age 91, both hemispheres
69.1
2317
Female, age 72, unknown
64.4
2014
Male, age 55, unknown
63.4
2162
Male, age 80, both hemispheres
59.7
2720
Male, age 74, both hemispheres
47.5
Medial parabrachial nucleus nTPM: 75.5
2156
Male, age 61, both hemispheres
96.3
2786
Male, age 76, both hemispheres
80.0
2854
Male, age 80, both hemispheres
71.4
2170
Female, age 91, both hemispheres
66.1
2463
Female, age 85, right hemisphere
63.8
Medial periolivary nuclei nTPM: 63.3
2458
Female, age 91, both hemispheres
69.8
2791
Male, age 74, right hemisphere
69.1
2081
Male, age 80, both hemispheres
67.8
2171
Female, age 85, both hemispheres
63.7
2063
Male, age 76, both hemispheres
45.9
Motor facial nucleus nTPM: 64.1
2126
Male, age 61, both hemispheres
85.8
2795
Female, age 91, both hemispheres
83.3
2365
Male, age 74, right hemisphere
58.9
2697
Female, age 85, both hemispheres
53.8
2327
Male, age 80, both hemispheres
52.4
2062
Male, age 76, both hemispheres
50.5
Motor trigeminal nucleus nTPM: 69.1
2335
Male, age 61, both hemispheres
84.4
2309
Male, age 76, both hemispheres
78.3
2079
Male, age 80, both hemispheres
70.3
2321
Female, age 91, both hemispheres
67.2
2560
Male, age 74, both hemispheres
45.3
Nuclei of the trapezoid body nTPM: 60.8
2368
Female, age 91, both hemispheres
75.1
2735
Female, age 85, both hemispheres
70.0
2166
Male, age 80, both hemispheres
58.7
1983
Male, age 76, both hemispheres
50.9
2159
Male, age 61, both hemispheres
49.5
Nucleus raphe magnus nTPM: 58.8
2051
Male, age 76, both hemispheres
69.7
2455
Male, age 74, both hemispheres
65.3
2459
Female, age 91, both hemispheres
62.8
2328
Male, age 80, both hemispheres
54.7
2172
Female, age 85, both hemispheres
54.1
2160
Male, age 61, both hemispheres
46.3
Paramedian reticular nucleus nTPM: 72.0
2052
Male, age 76, both hemispheres
84.2
2057
Male, age 80, both hemispheres
72.6
2313
Male, age 61, both hemispheres
70.5
2050
Female, age 85, both hemispheres
60.9
Pedunculopontine tegmental nucleus nTPM: 70.1
2338
Male, age 61, both hemispheres
83.5
2334
Male, age 80, both hemispheres
65.6
1921
Female, age 85, both hemispheres
61.3
Pontine nuclei nTPM: 55.6
2115
Male, age 80, left hemisphere
65.5
1863
Male, age 55, unknown
64.5
2787
Female, age 85, both hemispheres
58.4
2319
Female, age 91, both hemispheres
57.3
2727
Male, age 61, right hemisphere
56.8
2109
Female, age 72, unknown
56.0
1968
Male, age 76, left hemisphere
47.1
2454
Male, age 74, left hemisphere
38.8
Pontine raphe nucleus nTPM: 69.1
2853
Male, age 76, midline
81.6
2122
Female, age 85, midline
56.5
Posteroventral cochlear nucleus nTPM: 66.9
2070
Male, age 76, both hemispheres
87.2
2371
Male, age 61, both hemispheres
69.2
2135
Female, age 91, both hemispheres
64.7
2752
Female, age 85, both hemispheres
60.5
2341
Male, age 80, both hemispheres
52.9
Principal sensory trigeminal nucleus nTPM: 65.3
2324
Male, age 76, both hemispheres
85.0
2008
Male, age 80, left hemisphere
64.0
2367
Female, age 91, left hemisphere
62.3
2158
Male, age 61, both hemispheres
49.8
Reticular pontine nucleus, caudal nTPM: 59.2
2092
Male, age 76, both hemispheres
67.6
2457
Female, age 91, both hemispheres
65.4
2332
Male, age 80, right hemisphere
62.7
2559
Male, age 74, both hemispheres
41.3
Reticular pontine nucleus, oral nTPM: 62.2
1939
Male, age 80, both hemispheres
81.5
2167
Male, age 76, both hemispheres
69.6
2366
Female, age 91, both hemispheres
61.8
2012
Female, age 85, both hemispheres
59.6
2361
Male, age 74, both hemispheres
38.5
Reticulotegmental nucleus nTPM: 64.8
2333
Male, age 80, both hemispheres
72.3
2322
Female, age 91, both hemispheres
69.7
2325
Male, age 76, both hemispheres
67.2
2452
Male, age 74, both hemispheres
49.9
Spinal trigeminal nucleus, oral nTPM: 60.1
1978
Male, age 76, both hemispheres
66.0
2737
Female, age 85, both hemispheres
58.9
2164
Male, age 80, both hemispheres
55.3
Subcoeruleus area nTPM: 61.9
2089
Male, age 76, left hemisphere
68.8
1958
Male, age 80, both hemispheres
65.1
2369
Female, age 85, left hemisphere
64.8
2323
Female, age 91, left hemisphere
60.2
2451
Male, age 74, both hemispheres
50.5
Superior olive nTPM: 60.0
2364
Male, age 74, right hemisphere
65.1
2561
Female, age 91, both hemispheres
64.6
2020
Male, age 76, both hemispheres
64.0
2329
Male, age 80, right hemisphere
54.4
1875
Female, age 85, both hemispheres
51.9
Ventral periolivary nuclei nTPM: 65.5
2130
Female, age 85, both hemispheres
76.4
2023
Male, age 76, both hemispheres
65.0
2794
Female, age 91, left hemisphere
61.1
2165
Male, age 80, both hemispheres
59.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 64.2
2359
Male, age 61, both hemispheres
69.9
2840
Female, age 85, both hemispheres
68.8
1959
Male, age 76, both hemispheres
65.0
2456
Female, age 91, both hemispheres
64.4
2161
Male, age 80, both hemispheres
59.2
2449
Male, age 74, both hemispheres
57.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
