MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:151.5 nTPM
HPA Brain:187.4 nTPM
GTEx:151.5 nTPM
FANTOM5:219.7 Scaled Tags Per Million
Pig:75.1 nTPM
Mouse:33.1 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 187.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.6
2411 Female, age 72, unknown 153.7
1870 Female, age 42, unknown 143.7
1827 Male, age 72, unknown 139.1
2219 Male, age 76, both hemispheres 135.7
1833 Male, age 53, unknown 129.0
1830 Male, age 51, unknown 120.5
2828 Female, age 72, unknown 115.9
2666 Male, age 74, left hemisphere 110.1
2019 Male, age 18, unknown 105.3
2586 Male, age 75, left hemisphere 103.3
Dorsal raphe nucleus
nTPM: 151.9
2298 Female, age 72, unknown 202.1
2750 Male, age 76, both hemispheres 154.0
2047 Male, age 72, unknown 147.8
1828 Male, age 53, unknown 130.5
2016 Female, age 72, unknown 125.0
Inferior colliculus
nTPM: 146.7
2097 Female, age 72, unknown 174.2
2849 Male, age 72, unknown 148.5
1848 Female, age 42, unknown 135.5
1890 Male, age 53, unknown 128.6
Median raphe nucleus
nTPM: 187.4
2220 Male, age 76, midline 187.4
Periaquaductal grey, anterior
nTPM: 143.3
2502 Female, age 75, unknown 150.3
1947 Male, age 18, unknown 142.7
1795 Male, age 51, unknown 136.8
Periaquaductal grey, dorsal
nTPM: 143.4
1840 Male, age 53, unknown 164.6
2850 Male, age 76, both hemispheres 143.7
1831 Male, age 72, unknown 135.2
2464 Female, age 72, unknown 130.0
Periaquaductal grey, lateral
nTPM: 134.9
2140 Male, age 76, both hemispheres 145.7
2272 Male, age 74, both hemispheres 131.2
2053 Male, age 18, unknown 127.7
Pretectal area
nTPM: 137.6
2224 Female, age 72, unknown 182.5
2825 Male, age 18, unknown 149.4
2667 Female, age 75, unknown 140.8
1816 Male, age 51, unknown 139.4
2316 Male, age 76, right hemisphere 139.3
2273 Male, age 74, both hemispheres 138.6
1944 Female, age 72, unknown 133.6
1817 Female, age 42, unknown 133.5
2007 Male, age 72, unknown 129.7
1815 Male, age 53, unknown 125.2
2407 Male, age 75, both hemispheres 101.0
Red nucleus
nTPM: 118.7
1821 Female, age 72, unknown 134.8
2725 Female, age 75, unknown 131.9
2503 Female, age 72, unknown 131.7
1954 Female, age 42, unknown 126.8
2588 Male, age 74, left hemisphere 121.8
2227 Male, age 72, unknown 119.5
1904 Male, age 53, unknown 116.3
2769 Male, age 72, unknown 113.6
2823 Male, age 76, right hemisphere 113.0
2785 Male, age 18, unknown 110.2
1865 Male, age 51, unknown 105.2
2584 Male, age 75, left hemisphere 99.2
Substantia nigra
nTPM: 148.5
1916 Female, age 42, unknown 209.4
2241 Male, age 72, unknown 189.3
1851 Male, age 51, unknown 160.5
1941 Male, age 53, unknown 156.7
2699 Male, age 18, unknown 154.1
1889 Female, age 72, unknown 145.9
2409 Female, age 72, unknown 141.7
2590 Female, age 75, unknown 118.0
2583 Male, age 75, right hemisphere 107.3
2665 Male, age 74, both hemispheres 102.3
Superior colliculus
nTPM: 120.8
1796 Male, age 53, unknown 146.7
2261 Male, age 18, unknown 137.5
1839 Male, age 51, unknown 133.0
1895 Male, age 76, right hemisphere 130.5
2087 Female, age 72, unknown 125.3
2587 Male, age 74, left hemisphere 122.0
2668 Female, age 75, unknown 121.3
1913 Female, age 42, unknown 109.7
1995 Male, age 72, unknown 92.9
2664 Male, age 75, both hemispheres 89.3
Ventral tegmental area
nTPM: 158.7
2218 Male, age 76, both hemispheres 180.4
1915 Female, age 42, unknown 173.5
2410 Female, age 72, unknown 157.6
1942 Male, age 51, unknown 152.6
2223 Female, age 72, unknown 144.2
2021 Male, age 53, unknown 143.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 151.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.5
Samples: 139

Max nTPM: 266.7
Min nTPM: 78.3
Std nTPM: 38.5
Median nTPM: 145.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 266.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 265.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 260.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 252.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 251.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 244.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 243.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 226.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 221.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 218.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 205.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.7
FF:10158-103A5 76 years, female 219.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.2
Samples: 4

Max nTPM: 97.0
Min nTPM: 55.8
Sample A Female 97.0
Sample B Female 58.7
Sample C Male 89.2
Sample D Male 55.8
Midbrain
nTPM: 73.6
Samples: 4

Max nTPM: 90.6
Min nTPM: 63.6
Sample A Female 90.6
Sample B Female 63.6
Sample C Male 69.0
Sample D Male 71.2
Periaqueductal gray
nTPM: 68.2
Samples: 3

Max nTPM: 79.5
Min nTPM: 60.6
Sample B Female 60.6
Sample C Male 79.5
Sample D Male 64.6
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 87.8
Min nTPM: 68.3
Sample A Female 87.8
Sample B Female 68.9
Sample C Male 70.8
Sample D Male 68.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.2
Samples: 4

Max nTPM: 34.6
Min nTPM: 31.7
Sample A Male 34.6
Sample B Male 33.4
Sample C Female 32.9
Sample D Female 31.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
112196711 Antisense, RP_110421_01_D11, Mouse strain C57BL/6J (56 days, male) 3.5
100144105 Antisense, RP_110421_01_D11, Mouse strain C57BL/6J (56 days, male) 2.2

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