MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.0 nTPM
HPA Brain:23.2 nTPM
GTEx:33.0 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:42.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
2019 Male, age 18, unknown 26.7
1827 Male, age 72, unknown 22.5
2828 Female, age 72, unknown 20.7
2219 Male, age 76, both hemispheres 20.1
1870 Female, age 42, unknown 19.3
2411 Female, age 72, unknown 19.3
1833 Male, age 53, unknown 18.3
1830 Male, age 51, unknown 17.1
2666 Male, age 74, left hemisphere 16.0
2586 Male, age 75, left hemisphere 14.0
Dorsal raphe nucleus
nTPM: 19.5
2298 Female, age 72, unknown 20.7
1828 Male, age 53, unknown 20.6
2750 Male, age 76, both hemispheres 19.4
2016 Female, age 72, unknown 19.1
2047 Male, age 72, unknown 17.5
Inferior colliculus
nTPM: 21.1
1890 Male, age 53, unknown 22.4
2097 Female, age 72, unknown 21.9
1848 Female, age 42, unknown 20.5
2849 Male, age 72, unknown 19.7
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 17.8
1947 Male, age 18, unknown 19.2
1795 Male, age 51, unknown 18.6
2502 Female, age 75, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 17.8
1831 Male, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 17.9
2464 Female, age 72, unknown 17.8
1840 Male, age 53, unknown 17.6
Periaquaductal grey, lateral
nTPM: 19.3
2272 Male, age 74, both hemispheres 24.0
2053 Male, age 18, unknown 17.4
2140 Male, age 76, both hemispheres 16.3
Pretectal area
nTPM: 23.2
1817 Female, age 42, unknown 30.1
2667 Female, age 75, unknown 27.9
1944 Female, age 72, unknown 27.3
2007 Male, age 72, unknown 26.4
1816 Male, age 51, unknown 26.0
1815 Male, age 53, unknown 25.1
2273 Male, age 74, both hemispheres 22.3
2224 Female, age 72, unknown 20.1
2407 Male, age 75, both hemispheres 18.4
2316 Male, age 76, right hemisphere 16.7
2825 Male, age 18, unknown 14.3
Red nucleus
nTPM: 19.8
2785 Male, age 18, unknown 24.1
1821 Female, age 72, unknown 22.3
2503 Female, age 72, unknown 22.1
1954 Female, age 42, unknown 21.7
2823 Male, age 76, right hemisphere 21.7
2725 Female, age 75, unknown 21.6
1865 Male, age 51, unknown 21.5
1904 Male, age 53, unknown 19.4
2227 Male, age 72, unknown 17.4
2769 Male, age 72, unknown 17.4
2584 Male, age 75, left hemisphere 14.1
2588 Male, age 74, left hemisphere 14.1
Substantia nigra
nTPM: 20.4
1889 Female, age 72, unknown 23.8
2409 Female, age 72, unknown 22.0
2241 Male, age 72, unknown 21.2
1916 Female, age 42, unknown 21.0
1851 Male, age 51, unknown 20.8
1941 Male, age 53, unknown 20.0
2583 Male, age 75, right hemisphere 19.4
2590 Female, age 75, unknown 19.2
2665 Male, age 74, both hemispheres 18.6
2699 Male, age 18, unknown 18.4
Superior colliculus
nTPM: 20.3
2087 Female, age 72, unknown 25.5
1895 Male, age 76, right hemisphere 22.7
2587 Male, age 74, left hemisphere 22.1
1913 Female, age 42, unknown 21.0
1995 Male, age 72, unknown 20.7
1796 Male, age 53, unknown 20.5
2261 Male, age 18, unknown 20.5
1839 Male, age 51, unknown 18.1
2668 Female, age 75, unknown 17.6
2664 Male, age 75, both hemispheres 14.3
Ventral tegmental area
nTPM: 18.1
2410 Female, age 72, unknown 21.9
1915 Female, age 42, unknown 18.8
2218 Male, age 76, both hemispheres 18.5
2223 Female, age 72, unknown 17.8
1942 Male, age 51, unknown 16.5
2021 Male, age 53, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.0
Samples: 139

Max nTPM: 74.1
Min nTPM: 20.1
Std nTPM: 8.7
Median nTPM: 31.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 74.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 70.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 60.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 54.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 52.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 51.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 46.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 46.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 45.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 44.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 15.0
Min nTPM: 13.5
Sample A Female 15.0
Sample B Female 13.5
Sample C Male 13.8
Sample D Male 15.0
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 15.1
Min nTPM: 13.1
Sample A Female 14.6
Sample B Female 13.1
Sample C Male 14.9
Sample D Male 15.1
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 15.3
Min nTPM: 13.6
Sample B Female 14.3
Sample C Male 15.3
Sample D Male 13.6
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.9
Sample A Female 16.7
Sample B Female 17.8
Sample C Male 17.0
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 46.7
Min nTPM: 40.1
Sample A Male 41.9
Sample B Male 41.6
Sample C Female 40.1
Sample D Female 46.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69012807 Antisense, RP_050309_01_E06, Mouse strain C57BL/6J (56 days, male) 1.5

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