MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.5 nTPM
HPA Brain:81.7 nTPM
GTEx:64.5 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:158.2 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.5
2411 Female, age 72, unknown 86.0
2586 Male, age 75, left hemisphere 85.1
1827 Male, age 72, unknown 81.0
2019 Male, age 18, unknown 80.7
1870 Female, age 42, unknown 79.7
2828 Female, age 72, unknown 78.4
2666 Male, age 74, left hemisphere 74.5
1833 Male, age 53, unknown 73.9
1830 Male, age 51, unknown 69.1
2219 Male, age 76, both hemispheres 66.7
Dorsal raphe nucleus
nTPM: 77.9
2298 Female, age 72, unknown 84.5
2750 Male, age 76, both hemispheres 79.9
1828 Male, age 53, unknown 75.9
2047 Male, age 72, unknown 75.3
2016 Female, age 72, unknown 73.9
Inferior colliculus
nTPM: 72.0
2097 Female, age 72, unknown 74.8
2849 Male, age 72, unknown 72.1
1848 Female, age 42, unknown 71.5
1890 Male, age 53, unknown 69.8
Median raphe nucleus
nTPM: 77.9
2220 Male, age 76, midline 77.9
Periaquaductal grey, anterior
nTPM: 80.6
1947 Male, age 18, unknown 85.8
1795 Male, age 51, unknown 78.4
2502 Female, age 75, unknown 77.5
Periaquaductal grey, dorsal
nTPM: 72.4
2464 Female, age 72, unknown 74.5
1840 Male, age 53, unknown 73.8
1831 Male, age 72, unknown 72.6
2850 Male, age 76, both hemispheres 68.8
Periaquaductal grey, lateral
nTPM: 68.7
2053 Male, age 18, unknown 72.4
2272 Male, age 74, both hemispheres 67.5
2140 Male, age 76, both hemispheres 66.2
Pretectal area
nTPM: 81.7
1944 Female, age 72, unknown 93.6
1816 Male, age 51, unknown 92.9
2007 Male, age 72, unknown 92.4
1817 Female, age 42, unknown 92.0
1815 Male, age 53, unknown 85.5
2224 Female, age 72, unknown 78.6
2273 Male, age 74, both hemispheres 78.5
2667 Female, age 75, unknown 72.9
2316 Male, age 76, right hemisphere 71.5
2407 Male, age 75, both hemispheres 71.1
2825 Male, age 18, unknown 70.0
Red nucleus
nTPM: 75.6
1821 Female, age 72, unknown 84.9
2588 Male, age 74, left hemisphere 84.6
2725 Female, age 75, unknown 81.0
2503 Female, age 72, unknown 80.2
2785 Male, age 18, unknown 79.0
2769 Male, age 72, unknown 73.4
1904 Male, age 53, unknown 71.8
2584 Male, age 75, left hemisphere 71.1
2823 Male, age 76, right hemisphere 70.9
1865 Male, age 51, unknown 70.7
2227 Male, age 72, unknown 70.2
1954 Female, age 42, unknown 69.0
Substantia nigra
nTPM: 81.5
1941 Male, age 53, unknown 93.6
1916 Female, age 42, unknown 90.7
1851 Male, age 51, unknown 86.6
1889 Female, age 72, unknown 83.9
2241 Male, age 72, unknown 81.2
2590 Female, age 75, unknown 79.2
2665 Male, age 74, both hemispheres 77.9
2583 Male, age 75, right hemisphere 75.3
2699 Male, age 18, unknown 73.8
2409 Female, age 72, unknown 72.9
Superior colliculus
nTPM: 76.9
2668 Female, age 75, unknown 84.7
2587 Male, age 74, left hemisphere 80.3
2261 Male, age 18, unknown 79.7
1796 Male, age 53, unknown 78.9
1895 Male, age 76, right hemisphere 77.6
2087 Female, age 72, unknown 76.0
1839 Male, age 51, unknown 75.9
2664 Male, age 75, both hemispheres 75.7
1995 Male, age 72, unknown 73.0
1913 Female, age 42, unknown 66.9
Ventral tegmental area
nTPM: 75.9
2410 Female, age 72, unknown 88.1
1915 Female, age 42, unknown 80.2
1942 Male, age 51, unknown 76.7
2218 Male, age 76, both hemispheres 73.8
2021 Male, age 53, unknown 69.0
2223 Female, age 72, unknown 67.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 139

Max nTPM: 110.9
Min nTPM: 42.5
Std nTPM: 11.4
Median nTPM: 64.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 110.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 100.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 88.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 86.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 85.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 83.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 82.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 82.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 81.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 51.1
Min nTPM: 36.8
Sample A Female 51.1
Sample B Female 36.8
Sample C Male 44.5
Sample D Male 43.1
Midbrain
nTPM: 46.4
Samples: 4

Max nTPM: 54.7
Min nTPM: 41.7
Sample A Female 54.7
Sample B Female 46.7
Sample C Male 42.4
Sample D Male 41.7
Periaqueductal gray
nTPM: 42.0
Samples: 3

Max nTPM: 42.7
Min nTPM: 41.2
Sample B Female 42.2
Sample C Male 42.7
Sample D Male 41.2
Superior colliculi
nTPM: 42.1
Samples: 4

Max nTPM: 46.0
Min nTPM: 33.4
Sample A Female 46.0
Sample B Female 33.4
Sample C Male 44.4
Sample D Male 44.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 158.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 158.2
Samples: 4

Max nTPM: 165.2
Min nTPM: 150.4
Sample A Male 161.5
Sample B Male 165.2
Sample C Female 150.4
Sample D Female 155.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
1355 Antisense, RP_040407_02_D10, Mouse strain C57BL/6J (56 days, male) 3.3
1356 Antisense, RP_040407_02_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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