MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.6 nTPM
HPA Brain:79.5 nTPM
GTEx:3.6 nTPM
FANTOM5:87.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.9
2219 Male, age 76, both hemispheres 77.5
1827 Male, age 72, unknown 67.3
2666 Male, age 74, left hemisphere 61.0
2019 Male, age 18, unknown 59.8
2828 Female, age 72, unknown 54.1
2411 Female, age 72, unknown 51.8
2586 Male, age 75, left hemisphere 51.4
1833 Male, age 53, unknown 51.0
1870 Female, age 42, unknown 47.9
1830 Male, age 51, unknown 47.3
Dorsal raphe nucleus
nTPM: 47.2
2047 Male, age 72, unknown 50.8
2750 Male, age 76, both hemispheres 48.9
1828 Male, age 53, unknown 47.2
2298 Female, age 72, unknown 44.8
2016 Female, age 72, unknown 44.1
Inferior colliculus
nTPM: 66.2
2097 Female, age 72, unknown 68.3
2849 Male, age 72, unknown 67.6
1848 Female, age 42, unknown 65.5
1890 Male, age 53, unknown 63.5
Median raphe nucleus
nTPM: 53.0
2220 Male, age 76, midline 53.0
Periaquaductal grey, anterior
nTPM: 51.9
1795 Male, age 51, unknown 58.1
1947 Male, age 18, unknown 50.1
2502 Female, age 75, unknown 47.4
Periaquaductal grey, dorsal
nTPM: 63.0
1831 Male, age 72, unknown 72.2
2850 Male, age 76, both hemispheres 68.9
1840 Male, age 53, unknown 55.9
2464 Female, age 72, unknown 55.1
Periaquaductal grey, lateral
nTPM: 56.3
2053 Male, age 18, unknown 58.2
2272 Male, age 74, both hemispheres 55.6
2140 Male, age 76, both hemispheres 55.0
Pretectal area
nTPM: 79.5
1816 Male, age 51, unknown 123.6
1944 Female, age 72, unknown 110.7
1815 Male, age 53, unknown 98.2
1817 Female, age 42, unknown 94.3
2007 Male, age 72, unknown 83.5
2667 Female, age 75, unknown 76.5
2407 Male, age 75, both hemispheres 63.9
2273 Male, age 74, both hemispheres 58.8
2224 Female, age 72, unknown 57.7
2825 Male, age 18, unknown 54.1
2316 Male, age 76, right hemisphere 53.4
Red nucleus
nTPM: 55.2
2785 Male, age 18, unknown 67.4
2503 Female, age 72, unknown 64.8
2588 Male, age 74, left hemisphere 63.5
2725 Female, age 75, unknown 61.3
2584 Male, age 75, left hemisphere 59.0
2823 Male, age 76, right hemisphere 58.6
1865 Male, age 51, unknown 52.6
1904 Male, age 53, unknown 49.8
1954 Female, age 42, unknown 48.8
2227 Male, age 72, unknown 46.4
1821 Female, age 72, unknown 45.5
2769 Male, age 72, unknown 44.5
Substantia nigra
nTPM: 59.6
1889 Female, age 72, unknown 78.7
1941 Male, age 53, unknown 66.8
2665 Male, age 74, both hemispheres 61.9
2409 Female, age 72, unknown 59.4
2590 Female, age 75, unknown 58.2
2241 Male, age 72, unknown 57.6
2583 Male, age 75, right hemisphere 56.2
2699 Male, age 18, unknown 55.3
1916 Female, age 42, unknown 52.1
1851 Male, age 51, unknown 49.6
Superior colliculus
nTPM: 65.5
2087 Female, age 72, unknown 88.3
2261 Male, age 18, unknown 74.2
1913 Female, age 42, unknown 71.3
1895 Male, age 76, right hemisphere 66.6
1796 Male, age 53, unknown 65.7
2668 Female, age 75, unknown 63.7
2664 Male, age 75, both hemispheres 59.2
1995 Male, age 72, unknown 57.7
2587 Male, age 74, left hemisphere 56.6
1839 Male, age 51, unknown 51.6
Ventral tegmental area
nTPM: 49.6
2218 Male, age 76, both hemispheres 58.9
1942 Male, age 51, unknown 50.0
2223 Female, age 72, unknown 49.5
2410 Female, age 72, unknown 48.3
2021 Male, age 53, unknown 47.1
1915 Female, age 42, unknown 43.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.6
Samples: 139

Max nTPM: 8.6
Min nTPM: 1.5
Std nTPM: 1.1
Median nTPM: 3.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 8.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 6.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 5.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 5.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 5.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 5.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 5.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

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