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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
50.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 50.8
Samples: 152
Max nTPM: 173.9
Min nTPM: 1.2
Std nTPM: 31.0
Median nTPM: 43.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
173.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
150.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
141.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
138.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
119.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
117.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
116.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
109.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
109.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
103.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
101.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
96.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
96.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
93.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
91.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
90.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
88.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
87.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
85.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
84.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
83.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
83.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
82.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
81.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
80.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
78.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
76.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
76.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
75.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
75.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
75.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
73.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
72.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
71.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
70.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
70.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
70.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
69.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
68.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
67.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
65.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
64.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
64.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
63.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
62.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
61.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
61.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
61.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
60.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
59.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
59.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
59.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
59.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
57.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
56.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
56.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
55.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
55.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
55.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
53.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
53.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
53.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
52.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
52.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
51.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
51.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
50.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
50.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
50.8
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
50.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
48.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
47.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
47.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
46.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
43.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
43.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
43.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
43.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
43.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
41.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
41.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
40.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
40.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
39.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
39.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
38.8
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
38.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
37.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
36.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
36.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
36.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
35.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
35.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
35.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
34.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
34.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
34.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
34.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
34.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
34.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
33.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
32.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
32.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
31.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
31.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
30.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
29.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
29.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
29.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
29.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
29.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
28.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
27.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
27.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
26.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
26.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
26.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
26.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
25.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
25.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
25.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
24.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
24.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
23.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
23.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
23.2
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
23.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
21.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
21.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
21.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
21.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
20.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
20.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
20.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
19.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
19.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
19.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
16.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
16.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
16.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
15.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
14.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
14.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
13.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
13.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
12.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
11.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
9.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
6.4
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
4.8
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
2.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
1.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
