MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.2 nTPM
HPA Brain:33.4 nTPM
GTEx:68.2 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:65.9 nTPM
Mouse:30.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
2411 Female, age 72, unknown 34.7
1827 Male, age 72, unknown 29.8
2019 Male, age 18, unknown 29.6
1870 Female, age 42, unknown 29.4
1830 Male, age 51, unknown 25.5
2219 Male, age 76, both hemispheres 25.2
1833 Male, age 53, unknown 24.9
2586 Male, age 75, left hemisphere 23.5
2828 Female, age 72, unknown 19.5
2666 Male, age 74, left hemisphere 18.5
Dorsal raphe nucleus
nTPM: 26.7
2298 Female, age 72, unknown 34.2
2047 Male, age 72, unknown 29.3
2750 Male, age 76, both hemispheres 27.4
2016 Female, age 72, unknown 21.3
1828 Male, age 53, unknown 21.0
Inferior colliculus
nTPM: 24.5
1848 Female, age 42, unknown 27.0
2097 Female, age 72, unknown 25.3
1890 Male, age 53, unknown 24.8
2849 Male, age 72, unknown 20.9
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Periaquaductal grey, anterior
nTPM: 33.4
2502 Female, age 75, unknown 37.5
1947 Male, age 18, unknown 36.2
1795 Male, age 51, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 20.1
1840 Male, age 53, unknown 21.9
2464 Female, age 72, unknown 20.6
2850 Male, age 76, both hemispheres 19.2
1831 Male, age 72, unknown 18.8
Periaquaductal grey, lateral
nTPM: 20.9
2272 Male, age 74, both hemispheres 22.5
2053 Male, age 18, unknown 21.4
2140 Male, age 76, both hemispheres 18.8
Pretectal area
nTPM: 27.8
2007 Male, age 72, unknown 32.9
2224 Female, age 72, unknown 31.3
1816 Male, age 51, unknown 30.1
2273 Male, age 74, both hemispheres 29.8
1815 Male, age 53, unknown 27.8
1944 Female, age 72, unknown 27.3
2825 Male, age 18, unknown 26.1
2316 Male, age 76, right hemisphere 25.9
2407 Male, age 75, both hemispheres 25.6
2667 Female, age 75, unknown 24.5
1817 Female, age 42, unknown 24.2
Red nucleus
nTPM: 26.7
1821 Female, age 72, unknown 32.7
2588 Male, age 74, left hemisphere 32.3
2503 Female, age 72, unknown 31.6
1865 Male, age 51, unknown 31.2
2227 Male, age 72, unknown 27.9
2769 Male, age 72, unknown 27.3
2725 Female, age 75, unknown 26.7
1904 Male, age 53, unknown 26.5
1954 Female, age 42, unknown 25.2
2785 Male, age 18, unknown 21.1
2584 Male, age 75, left hemisphere 19.1
2823 Male, age 76, right hemisphere 18.8
Substantia nigra
nTPM: 31.0
2409 Female, age 72, unknown 56.5
1916 Female, age 42, unknown 40.5
1851 Male, age 51, unknown 34.1
1941 Male, age 53, unknown 30.9
1889 Female, age 72, unknown 30.3
2241 Male, age 72, unknown 27.3
2590 Female, age 75, unknown 25.3
2583 Male, age 75, right hemisphere 23.6
2699 Male, age 18, unknown 23.6
2665 Male, age 74, both hemispheres 17.7
Superior colliculus
nTPM: 24.8
2261 Male, age 18, unknown 31.0
1796 Male, age 53, unknown 29.5
1895 Male, age 76, right hemisphere 29.1
2668 Female, age 75, unknown 28.0
2587 Male, age 74, left hemisphere 24.7
2087 Female, age 72, unknown 22.6
1839 Male, age 51, unknown 22.2
2664 Male, age 75, both hemispheres 21.3
1913 Female, age 42, unknown 20.0
1995 Male, age 72, unknown 19.2
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 35.8
1915 Female, age 42, unknown 31.3
2223 Female, age 72, unknown 30.7
2218 Male, age 76, both hemispheres 28.6
1942 Male, age 51, unknown 27.7
2021 Male, age 53, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 139

Max nTPM: 131.8
Min nTPM: 20.0
Std nTPM: 21.6
Median nTPM: 64.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 131.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 130.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 126.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 120.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 117.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 107.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 106.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 103.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.9
Samples: 4

Max nTPM: 89.7
Min nTPM: 54.9
Sample A Female 89.7
Sample B Female 57.0
Sample C Male 61.8
Sample D Male 54.9
Midbrain
nTPM: 61.2
Samples: 4

Max nTPM: 93.9
Min nTPM: 45.7
Sample A Female 93.9
Sample B Female 54.0
Sample C Male 45.7
Sample D Male 51.1
Periaqueductal gray
nTPM: 48.4
Samples: 3

Max nTPM: 52.9
Min nTPM: 46.1
Sample B Female 46.3
Sample C Male 52.9
Sample D Male 46.1
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 75.3
Min nTPM: 55.1
Sample A Female 75.3
Sample B Female 67.3
Sample C Male 58.5
Sample D Male 55.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 32.1
Min nTPM: 28.1
Sample A Male 32.1
Sample B Male 30.1
Sample C Female 28.1
Sample D Female 31.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68744630 Antisense, RP_050208_01_C08, Mouse strain C57BL/6J (56 days, male) 1.1

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