MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA Brain:47.9 nTPM
GTEx:30.0 nTPM
FANTOM5:121.5 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:30.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2019 Male, age 18, unknown 41.8
2411 Female, age 72, unknown 41.8
1833 Male, age 53, unknown 41.3
1830 Male, age 51, unknown 41.0
1870 Female, age 42, unknown 40.7
2666 Male, age 74, left hemisphere 35.0
2828 Female, age 72, unknown 32.1
1827 Male, age 72, unknown 31.8
2219 Male, age 76, both hemispheres 30.4
2586 Male, age 75, left hemisphere 25.9
Dorsal raphe nucleus
nTPM: 29.6
2750 Male, age 76, both hemispheres 42.0
2016 Female, age 72, unknown 29.5
1828 Male, age 53, unknown 28.8
2047 Male, age 72, unknown 26.5
2298 Female, age 72, unknown 21.4
Inferior colliculus
nTPM: 31.7
1848 Female, age 42, unknown 33.6
1890 Male, age 53, unknown 32.7
2849 Male, age 72, unknown 30.9
2097 Female, age 72, unknown 29.8
Median raphe nucleus
nTPM: 29.2
2220 Male, age 76, midline 29.2
Periaquaductal grey, anterior
nTPM: 27.7
2502 Female, age 75, unknown 31.4
1947 Male, age 18, unknown 29.2
1795 Male, age 51, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 26.0
2464 Female, age 72, unknown 32.1
1831 Male, age 72, unknown 25.7
2850 Male, age 76, both hemispheres 23.7
1840 Male, age 53, unknown 22.5
Periaquaductal grey, lateral
nTPM: 23.1
2053 Male, age 18, unknown 24.8
2272 Male, age 74, both hemispheres 23.1
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 27.8
1815 Male, age 53, unknown 33.9
2316 Male, age 76, right hemisphere 33.8
1817 Female, age 42, unknown 33.5
2007 Male, age 72, unknown 31.4
2825 Male, age 18, unknown 26.9
2407 Male, age 75, both hemispheres 26.3
1816 Male, age 51, unknown 25.8
2224 Female, age 72, unknown 24.5
1944 Female, age 72, unknown 24.4
2667 Female, age 75, unknown 23.4
2273 Male, age 74, both hemispheres 21.8
Red nucleus
nTPM: 47.9
1865 Male, age 51, unknown 54.7
2503 Female, age 72, unknown 54.6
2823 Male, age 76, right hemisphere 53.9
1904 Male, age 53, unknown 51.5
1821 Female, age 72, unknown 51.1
1954 Female, age 42, unknown 50.0
2725 Female, age 75, unknown 49.1
2588 Male, age 74, left hemisphere 46.5
2785 Male, age 18, unknown 46.1
2769 Male, age 72, unknown 44.2
2227 Male, age 72, unknown 43.5
2584 Male, age 75, left hemisphere 29.8
Substantia nigra
nTPM: 30.3
2409 Female, age 72, unknown 37.4
2241 Male, age 72, unknown 34.5
1889 Female, age 72, unknown 33.3
2583 Male, age 75, right hemisphere 31.0
2590 Female, age 75, unknown 30.2
1851 Male, age 51, unknown 29.8
2699 Male, age 18, unknown 28.3
1941 Male, age 53, unknown 28.0
2665 Male, age 74, both hemispheres 25.6
1916 Female, age 42, unknown 25.3
Superior colliculus
nTPM: 30.4
1895 Male, age 76, right hemisphere 41.5
1913 Female, age 42, unknown 36.3
1995 Male, age 72, unknown 33.8
2587 Male, age 74, left hemisphere 32.4
1839 Male, age 51, unknown 31.9
2668 Female, age 75, unknown 29.6
2087 Female, age 72, unknown 25.5
2261 Male, age 18, unknown 25.0
1796 Male, age 53, unknown 24.7
2664 Male, age 75, both hemispheres 23.7
Ventral tegmental area
nTPM: 30.8
2223 Female, age 72, unknown 37.1
2410 Female, age 72, unknown 35.9
2021 Male, age 53, unknown 28.6
2218 Male, age 76, both hemispheres 28.5
1942 Male, age 51, unknown 28.4
1915 Female, age 42, unknown 26.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.0
Samples: 139

Max nTPM: 85.6
Min nTPM: 15.3
Std nTPM: 10.5
Median nTPM: 28.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 85.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 64.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 58.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 55.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 53.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 51.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 49.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 48.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 47.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 47.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.5
FF:10158-103A5 76 years, female 121.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.1
Samples: 4

Max nTPM: 29.0
Min nTPM: 24.7
Sample A Female 29.0
Sample B Female 28.1
Sample C Male 24.7
Sample D Male 26.7
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 33.5
Min nTPM: 27.1
Sample A Female 33.5
Sample B Female 30.5
Sample C Male 27.1
Sample D Male 27.5
Periaqueductal gray
nTPM: 30.1
Samples: 3

Max nTPM: 32.9
Min nTPM: 28.3
Sample B Female 29.2
Sample C Male 28.3
Sample D Male 32.9
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 32.4
Min nTPM: 27.7
Sample A Female 29.5
Sample B Female 27.7
Sample C Male 32.4
Sample D Male 27.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 32.4
Min nTPM: 30.0
Sample A Male 32.4
Sample B Male 30.9
Sample C Female 30.0
Sample D Female 30.1

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