MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.0 nTPM
HPA Brain:59.8 nTPM
GTEx:43.0 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:13.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.5
2666 Male, age 74, left hemisphere 55.5
2586 Male, age 75, left hemisphere 52.2
1827 Male, age 72, unknown 49.8
1870 Female, age 42, unknown 43.9
2411 Female, age 72, unknown 43.3
2219 Male, age 76, both hemispheres 40.5
1833 Male, age 53, unknown 39.8
1830 Male, age 51, unknown 39.2
2828 Female, age 72, unknown 38.6
2019 Male, age 18, unknown 22.2
Dorsal raphe nucleus
nTPM: 49.0
2298 Female, age 72, unknown 61.7
2047 Male, age 72, unknown 53.0
2750 Male, age 76, both hemispheres 43.6
1828 Male, age 53, unknown 43.5
2016 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 43.2
2097 Female, age 72, unknown 48.2
2849 Male, age 72, unknown 42.3
1848 Female, age 42, unknown 42.2
1890 Male, age 53, unknown 40.3
Median raphe nucleus
nTPM: 54.6
2220 Male, age 76, midline 54.6
Periaquaductal grey, anterior
nTPM: 59.8
1947 Male, age 18, unknown 79.5
1795 Male, age 51, unknown 53.9
2502 Female, age 75, unknown 46.0
Periaquaductal grey, dorsal
nTPM: 41.6
1840 Male, age 53, unknown 55.7
2850 Male, age 76, both hemispheres 37.9
1831 Male, age 72, unknown 37.8
2464 Female, age 72, unknown 35.0
Periaquaductal grey, lateral
nTPM: 42.2
2053 Male, age 18, unknown 47.5
2272 Male, age 74, both hemispheres 39.8
2140 Male, age 76, both hemispheres 39.4
Pretectal area
nTPM: 41.6
2825 Male, age 18, unknown 61.4
2224 Female, age 72, unknown 60.5
2407 Male, age 75, both hemispheres 48.0
2007 Male, age 72, unknown 45.3
2316 Male, age 76, right hemisphere 40.9
1816 Male, age 51, unknown 37.2
1815 Male, age 53, unknown 36.2
1944 Female, age 72, unknown 34.4
1817 Female, age 42, unknown 34.1
2667 Female, age 75, unknown 34.1
2273 Male, age 74, both hemispheres 25.5
Red nucleus
nTPM: 31.8
2584 Male, age 75, left hemisphere 47.0
2588 Male, age 74, left hemisphere 42.3
1821 Female, age 72, unknown 35.6
2725 Female, age 75, unknown 34.5
2503 Female, age 72, unknown 32.6
2227 Male, age 72, unknown 31.8
2769 Male, age 72, unknown 31.6
1954 Female, age 42, unknown 29.1
1904 Male, age 53, unknown 27.0
1865 Male, age 51, unknown 24.3
2785 Male, age 18, unknown 23.9
2823 Male, age 76, right hemisphere 22.4
Substantia nigra
nTPM: 50.5
1916 Female, age 42, unknown 62.6
2590 Female, age 75, unknown 56.4
2665 Male, age 74, both hemispheres 55.1
1851 Male, age 51, unknown 54.9
2241 Male, age 72, unknown 54.0
1941 Male, age 53, unknown 51.4
2583 Male, age 75, right hemisphere 49.2
2699 Male, age 18, unknown 41.1
2409 Female, age 72, unknown 40.5
1889 Female, age 72, unknown 40.0
Superior colliculus
nTPM: 39.2
1839 Male, age 51, unknown 48.1
2261 Male, age 18, unknown 47.5
2668 Female, age 75, unknown 45.7
1895 Male, age 76, right hemisphere 45.6
1796 Male, age 53, unknown 43.7
2664 Male, age 75, both hemispheres 42.6
2587 Male, age 74, left hemisphere 37.6
1913 Female, age 42, unknown 29.4
2087 Female, age 72, unknown 26.4
1995 Male, age 72, unknown 25.3
Ventral tegmental area
nTPM: 53.3
1915 Female, age 42, unknown 61.6
1942 Male, age 51, unknown 60.1
2218 Male, age 76, both hemispheres 54.5
2021 Male, age 53, unknown 52.3
2223 Female, age 72, unknown 45.8
2410 Female, age 72, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.0
Samples: 139

Max nTPM: 125.9
Min nTPM: 10.1
Std nTPM: 22.5
Median nTPM: 38.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 105.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 99.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 88.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 85.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 85.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 85.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 80.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 78.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 77.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.2
FF:10158-103A5 76 years, female 9.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 17.5
Min nTPM: 8.9
Sample A Female 17.5
Sample B Female 14.5
Sample C Male 14.0
Sample D Male 8.9
Midbrain
nTPM: 11.0
Samples: 4

Max nTPM: 14.9
Min nTPM: 7.6
Sample A Female 14.9
Sample B Female 13.0
Sample C Male 7.6
Sample D Male 8.5
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 14.1
Min nTPM: 11.3
Sample B Female 12.1
Sample C Male 14.1
Sample D Male 11.3
Superior colliculi
nTPM: 11.0
Samples: 4

Max nTPM: 15.1
Min nTPM: 6.8
Sample A Female 15.1
Sample B Female 13.5
Sample C Male 6.8
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.3
Sample A Male 14.1
Sample B Male 15.1
Sample C Female 13.4
Sample D Female 11.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70565264 Antisense, RP_050623_04_F02, Mouse strain C57BL/6J (56 days, male) 1.9
74047774 Antisense, RP_051214_01_H11, Mouse strain C57BL/6J (56 days, male) 0.6

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