HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.8 nTPM
HPA Brain:66.1 nTPM
GTEx:85.8 nTPM
FANTOM5:68.1 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:2.0 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.1
Sample id Sample description nTPM
Hippocampus
nTPM: 38.0
2621 Female, age 67, right hemisphere 49.4
1911 Female, age 85, right hemisphere 48.4
2529 Female, age 94, left hemisphere 39.0
1898 Male, age 80, left hemisphere 38.5
1855 Male, age 76, left hemisphere 27.4
2148 Female, age 91, left hemisphere 25.6
Dentate gyrus
nTPM: 44.2
2530 Female, age 94, left hemisphere 102.7
2010 Male, age 76, both hemispheres 42.0
2528 Male, age 74, both hemispheres 41.3
2531 Female, age 67, both hemispheres 30.4
2246 Female, age 85, both hemispheres 30.2
1927 Female, age 91, both hemispheres 18.8
Entorhinal gyrus
nTPM: 42.9
2117 Female, age 91, right hemisphere 79.0
2764 Male, age 80, right hemisphere 57.5
1938 Female, age 85, left hemisphere 34.6
1787 Male, age 76, left hemisphere 30.3
2613 Female, age 94, left hemisphere 28.9
2686 Male, age 75, right hemisphere 27.4
Hippocampus, CA1
nTPM: 27.4
2527 Male, age 74, both hemispheres 36.2
1873 Female, age 85, both hemispheres 35.3
2749 Male, age 80, left hemisphere 29.3
2082 Female, age 91, right hemisphere 27.9
2045 Male, age 76, both hemispheres 8.5
Hippocampus, CA2
nTPM: 44.3
2249 Male, age 74, both hemispheres 59.0
1963 Male, age 80, left hemisphere 55.6
2437 Female, age 94, left hemisphere 50.7
1940 Female, age 85, left hemisphere 44.6
2113 Female, age 91, right hemisphere 34.2
1892 Male, age 76, both hemispheres 21.9
Hippocampus, CA3
nTPM: 25.1
1891 Female, age 85, both hemispheres 56.4
1867 Male, age 76, both hemispheres 33.7
2436 Male, age 74, both hemispheres 29.5
2137 Male, age 80, left hemisphere 14.6
2620 Female, age 94, left hemisphere 10.0
2861 Female, age 67, both hemispheres 6.7
Parahippocampal cortex
nTPM: 31.8
2532 Female, age 72, left hemisphere 54.6
2692 Male, age 74, both hemispheres 50.0
1990 Female, age 91, right hemisphere 39.4
2245 Female, age 91, both hemispheres 34.8
1850 Male, age 80, both hemispheres 33.5
2018 Male, age 76, both hemispheres 32.5
1933 Female, age 85, both hemispheres 28.6
2693 Female, age 94, both hemispheres 18.8
2250 Female, age 67, right hemisphere 18.3
2622 Female, age 67, right hemisphere 6.9
Perirhinal gyrus
nTPM: 18.1
2848 Male, age 76, right hemisphere 21.1
2521 Female, age 94, right hemisphere 20.5
1794 Male, age 80, right hemisphere 20.0
1847 Female, age 91, left hemisphere 15.9
1841 Female, age 85, right hemisphere 13.3
Subiculum
nTPM: 66.1
2042 Male, age 76, both hemispheres 109.9
1901 Male, age 80, both hemispheres 84.5
2438 Female, age 94, left hemisphere 65.1
1977 Female, age 85, both hemispheres 53.6
2619 Male, age 74, both hemispheres 49.3
2729 Female, age 91, right hemisphere 34.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 85.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 85.8
Samples: 197

Max nTPM: 376.0
Min nTPM: 4.6
Std nTPM: 64.7
Median nTPM: 70.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 376.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 341.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 325.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 292.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 250.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 219.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 217.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 214.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 212.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 211.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 202.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.1
FF:10169-103B7 60 years, female 70.6
FF:10153-102I9 76 years, female 65.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Subiculum
nTPM: 1.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.4
Sample C Male 0.9
Sample D Male 3.0
Dorsal hippocampus
nTPM: 6.6
Samples: 4

Max nTPM: 12.0
Min nTPM: 1.7
Sample A Female 9.3
Sample B Female 3.4
Sample C Male 12.0
Sample D Male 1.7
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.6
Sample C Male 0.3
Sample D Male 0.5
Ventral hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 0.5
Sample A Female 7.1
Sample B Female 0.5
Sample C Male 5.0
Sample D Male 5.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.0
Samples: 4

Max nTPM: 3.5
Min nTPM: 0.7
Sample A Male 2.3
Sample B Male 3.5
Sample C Female 1.4
Sample D Female 0.7
Hippocampal formation
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.0
Sample A Male 1.6
Sample B Male 1.4
Sample C Female 1.0
Sample D Female 1.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
70565129 Antisense, RP_050623_04_C08, Mouse strain C57BL/6J (56 days, male) 1.4
74988616 Antisense, RP_060315_05_F09, Mouse strain C57BL/6J (56 days, male) 0.3

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