MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:148.9 nTPM
HPA Brain:187.7 nTPM
GTEx:148.9 nTPM
FANTOM5:423.7 Scaled Tags Per Million
Pig:174.7 nTPM
Mouse:57.0 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 187.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 123.6
2411 Female, age 72, unknown 174.7
2019 Male, age 18, unknown 173.1
1870 Female, age 42, unknown 168.1
1830 Male, age 51, unknown 167.0
1833 Male, age 53, unknown 155.5
2828 Female, age 72, unknown 117.0
2219 Male, age 76, both hemispheres 82.2
2666 Male, age 74, left hemisphere 79.8
1827 Male, age 72, unknown 72.4
2586 Male, age 75, left hemisphere 46.5
Dorsal raphe nucleus
nTPM: 91.2
2750 Male, age 76, both hemispheres 194.7
1828 Male, age 53, unknown 90.9
2016 Female, age 72, unknown 78.0
2047 Male, age 72, unknown 54.7
2298 Female, age 72, unknown 37.9
Inferior colliculus
nTPM: 72.1
1890 Male, age 53, unknown 91.9
1848 Female, age 42, unknown 75.8
2849 Male, age 72, unknown 68.0
2097 Female, age 72, unknown 53.0
Median raphe nucleus
nTPM: 97.3
2220 Male, age 76, midline 97.3
Periaquaductal grey, anterior
nTPM: 40.7
1947 Male, age 18, unknown 51.6
1795 Male, age 51, unknown 37.4
2502 Female, age 75, unknown 33.1
Periaquaductal grey, dorsal
nTPM: 39.9
2464 Female, age 72, unknown 67.4
1831 Male, age 72, unknown 51.6
2850 Male, age 76, both hemispheres 21.8
1840 Male, age 53, unknown 18.9
Periaquaductal grey, lateral
nTPM: 48.7
2272 Male, age 74, both hemispheres 69.2
2053 Male, age 18, unknown 55.2
2140 Male, age 76, both hemispheres 21.7
Pretectal area
nTPM: 61.9
1815 Male, age 53, unknown 89.4
2316 Male, age 76, right hemisphere 82.1
2407 Male, age 75, both hemispheres 82.0
1817 Female, age 42, unknown 73.6
2007 Male, age 72, unknown 71.0
2273 Male, age 74, both hemispheres 65.5
2825 Male, age 18, unknown 61.4
2224 Female, age 72, unknown 46.6
1944 Female, age 72, unknown 41.9
2667 Female, age 75, unknown 37.7
1816 Male, age 51, unknown 29.3
Red nucleus
nTPM: 187.7
1821 Female, age 72, unknown 253.0
2823 Male, age 76, right hemisphere 242.8
1865 Male, age 51, unknown 236.0
1904 Male, age 53, unknown 205.7
2769 Male, age 72, unknown 192.5
2785 Male, age 18, unknown 188.2
2227 Male, age 72, unknown 187.7
1954 Female, age 42, unknown 164.7
2725 Female, age 75, unknown 162.3
2503 Female, age 72, unknown 159.6
2588 Male, age 74, left hemisphere 135.9
2584 Male, age 75, left hemisphere 123.7
Substantia nigra
nTPM: 81.4
1889 Female, age 72, unknown 116.6
2583 Male, age 75, right hemisphere 109.8
2590 Female, age 75, unknown 106.8
1851 Male, age 51, unknown 97.6
1941 Male, age 53, unknown 82.1
2409 Female, age 72, unknown 77.9
1916 Female, age 42, unknown 67.5
2699 Male, age 18, unknown 62.9
2241 Male, age 72, unknown 55.1
2665 Male, age 74, both hemispheres 38.0
Superior colliculus
nTPM: 92.1
1913 Female, age 42, unknown 151.0
1995 Male, age 72, unknown 136.3
2587 Male, age 74, left hemisphere 124.6
2668 Female, age 75, unknown 122.9
1895 Male, age 76, right hemisphere 118.6
1839 Male, age 51, unknown 88.5
1796 Male, age 53, unknown 61.1
2087 Female, age 72, unknown 50.9
2261 Male, age 18, unknown 36.9
2664 Male, age 75, both hemispheres 30.1
Ventral tegmental area
nTPM: 121.2
2223 Female, age 72, unknown 250.8
2410 Female, age 72, unknown 142.5
2218 Male, age 76, both hemispheres 106.8
1942 Male, age 51, unknown 87.2
1915 Female, age 42, unknown 71.6
2021 Male, age 53, unknown 68.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 148.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.9
Samples: 139

Max nTPM: 857.9
Min nTPM: 20.8
Std nTPM: 116.3
Median nTPM: 118.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 857.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 622.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 564.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 465.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 464.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 400.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 347.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 330.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 320.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 307.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 296.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 423.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 423.7
FF:10158-103A5 76 years, female 423.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 174.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.3
Samples: 4

Max nTPM: 156.4
Min nTPM: 20.3
Sample A Female 100.8
Sample B Female 20.3
Sample C Male 71.5
Sample D Male 156.4
Midbrain
nTPM: 174.7
Samples: 4

Max nTPM: 613.8
Min nTPM: 16.5
Sample A Female 613.8
Sample B Female 33.6
Sample C Male 34.8
Sample D Male 16.5
Periaqueductal gray
nTPM: 23.4
Samples: 3

Max nTPM: 32.9
Min nTPM: 13.7
Sample B Female 23.5
Sample C Male 13.7
Sample D Male 32.9
Superior colliculi
nTPM: 53.3
Samples: 4

Max nTPM: 73.2
Min nTPM: 27.9
Sample A Female 48.1
Sample B Female 27.9
Sample C Male 73.2
Sample D Male 64.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 63.4
Min nTPM: 49.6
Sample A Male 61.8
Sample B Male 53.3
Sample C Female 49.6
Sample D Female 63.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
70565129 Antisense, RP_050623_04_C08, Mouse strain C57BL/6J (56 days, male) 4.4
74988616 Antisense, RP_060315_05_F09, Mouse strain C57BL/6J (56 days, male) 1.4

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