BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:67.9 nTPM
GTEx:23.2 nTPM
FANTOM5:81.7 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:48.7 nTPM
Allen mouse:1.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031406
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.4
1781 Male, age 74, unknown 58.5
2288 Male, age 75, left hemisphere 52.6
2289 Male, age 61, right hemisphere 46.6
1854 Male, age 80, left hemisphere 44.8
2846 Female, age 79, unknown 41.6
1857 Female, age 85, left hemisphere 36.2
2290 Female, age 72, unknown 35.7
2481 Female, age 94, left hemisphere 31.0
Globus pallidus, externus
nTPM: 67.9
2567 Female, age 72, unknown 109.0
2646 Male, age 61, right hemisphere 75.5
1996 Male, age 80, right hemisphere 54.3
2772 Female, age 79, unknown 51.7
2395 Male, age 75, both hemispheres 49.0
Globus pallidus, internus
nTPM: 65.3
2566 Female, age 72, unknown 90.3
2111 Female, age 85, right hemisphere 87.3
2778 Female, age 91, both hemispheres 72.5
2037 Male, age 80, right hemisphere 62.1
1818 Male, age 74, unknown 60.0
2287 Male, age 75, right hemisphere 48.1
2483 Female, age 94, right hemisphere 36.4
Nucleus accumbens
nTPM: 46.8
1783 Male, age 74, unknown 54.5
2732 Male, age 80, right hemisphere 52.7
2698 Female, age 72, unknown 52.5
2824 Male, age 61, right hemisphere 52.5
2286 Male, age 75, left hemisphere 45.7
1806 Female, age 85, left hemisphere 44.0
2391 Female, age 94, left hemisphere 39.3
1856 Female, age 91, right hemisphere 33.5
Nucleus basalis of Meynert
nTPM: 47.4
2569 Male, age 61, both hemispheres 62.2
2821 Male, age 75, both hemispheres 45.4
2484 Female, age 94, left hemisphere 42.5
2393 Male, age 80, right hemisphere 39.5
Nucleus of the diagonal band
nTPM: 52.1
2029 Male, age 61, right hemisphere 74.2
2195 Female, age 85, both hemispheres 56.8
2775 Male, age 80, right hemisphere 46.4
1979 Male, age 74, unknown 44.1
1812 Female, age 91, both hemispheres 38.8
Putamen
nTPM: 46.6
2647 Male, age 75, left hemisphere 58.5
2489 Female, age 72, unknown 56.3
1829 Male, age 74, unknown 50.0
1937 Female, age 91, right hemisphere 45.5
2466 Female, age 79, unknown 43.3
2482 Female, age 94, left hemisphere 37.7
1838 Male, age 80, right hemisphere 35.1
Septal nuclei
nTPM: 52.5
2394 Male, age 61, left hemisphere 68.1
2629 Female, age 94, right hemisphere 64.1
1960 Male, age 74, unknown 58.0
2059 Female, age 85, both hemispheres 50.9
2031 Female, age 72, unknown 43.6
2009 Female, age 91, both hemispheres 41.7
2199 Male, age 80, right hemisphere 41.2
Stria terminalis, bed nucleus
nTPM: 61.5
2486 Female, age 94, both hemispheres 68.8
2201 Male, age 74, unknown 60.7
1974 Female, age 91, both hemispheres 55.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.1
Samples: 246

Max nTPM: 41.3
Min nTPM: 6.0
Std nTPM: 7.3
Median nTPM: 21.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 41.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 40.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 40.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 40.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 36.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 34.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 34.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 33.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 33.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 33.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.1
Samples: 246

Max nTPM: 45.4
Min nTPM: 2.5
Std nTPM: 7.9
Median nTPM: 23.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 45.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 40.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 40.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 39.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 39.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 38.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 37.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 36.7
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 35.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 34.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 34.8
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Brain - Putamen (basal ganglia)
Average nTPM: 23.2
Samples: 205

Max nTPM: 59.2
Min nTPM: 3.8
Std nTPM: 9.2
Median nTPM: 23.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 59.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 57.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 51.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 44.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 42.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 39.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 39.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 39.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 38.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 38.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 38.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.2
FF:10164-103B2 76 years, female 39.2
Nucleus accumbens
Scaled Tags Per Million: 55.9
FF:10037-101F1 23-56 years, mixed 55.9
Putamen
Scaled Tags Per Million: 53.6
FF:10176-103C5 60 years, female 53.6
Globus pallidus
Scaled Tags Per Million: 81.7
FF:10161-103A8 76 years, female 93.6
FF:10175-103C4 60 years, female 69.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Caudate
nTPM: 29.7
Samples: 4

Max nTPM: 35.5
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 31.1
Sample C Male 35.5
Sample D Male 28.4
Putamen
nTPM: 30.2
Samples: 4

Max nTPM: 37.8
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 25.7
Sample C Male 31.4
Sample D Male 37.8
Septum
nTPM: 30.1
Samples: 4

Max nTPM: 40.7
Min nTPM: 25.7
Sample A Female 26.7
Sample B Female 25.7
Sample C Male 40.7
Sample D Male 27.2
Ventral pallidum
nTPM: 29.6
Samples: 4

Max nTPM: 40.1
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 24.9
Sample C Male 40.1
Sample D Male 28.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 48.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.5
Samples: 4

Max nTPM: 40.9
Min nTPM: 34.8
Sample A Male 36.9
Sample B Male 40.9
Sample C Female 37.2
Sample D Female 34.8
Septum
nTPM: 48.7
Samples: 4

Max nTPM: 50.2
Min nTPM: 47.3
Sample A Male 50.2
Sample B Male 47.3
Sample C Female 48.9
Sample D Female 48.4
Ventral forebrain
nTPM: 44.8
Samples: 4

Max nTPM: 46.4
Min nTPM: 42.4
Sample A Male 44.3
Sample B Male 46.0
Sample C Female 42.4
Sample D Female 46.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
532674 Antisense, RP_040825_01_C09, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.9
532674 Antisense, RP_040825_01_C09, Mouse strain C57BL/6J (56 days, male) 1.9

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