MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA Brain:64.4 nTPM
GTEx:24.9 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:42.7 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.7
2219 Male, age 76, both hemispheres 77.6
2411 Female, age 72, unknown 72.7
1833 Male, age 53, unknown 65.5
1830 Male, age 51, unknown 63.3
2666 Male, age 74, left hemisphere 61.0
2586 Male, age 75, left hemisphere 56.9
2828 Female, age 72, unknown 55.3
1827 Male, age 72, unknown 54.0
1870 Female, age 42, unknown 52.6
2019 Male, age 18, unknown 48.4
Dorsal raphe nucleus
nTPM: 51.7
2750 Male, age 76, both hemispheres 74.4
2047 Male, age 72, unknown 51.2
1828 Male, age 53, unknown 47.3
2298 Female, age 72, unknown 44.5
2016 Female, age 72, unknown 41.4
Inferior colliculus
nTPM: 45.6
2849 Male, age 72, unknown 53.4
1848 Female, age 42, unknown 44.7
1890 Male, age 53, unknown 44.2
2097 Female, age 72, unknown 39.9
Median raphe nucleus
nTPM: 56.7
2220 Male, age 76, midline 56.7
Periaquaductal grey, anterior
nTPM: 56.9
1947 Male, age 18, unknown 60.5
2502 Female, age 75, unknown 58.3
1795 Male, age 51, unknown 51.9
Periaquaductal grey, dorsal
nTPM: 43.7
2464 Female, age 72, unknown 57.5
1831 Male, age 72, unknown 42.4
1840 Male, age 53, unknown 41.7
2850 Male, age 76, both hemispheres 33.2
Periaquaductal grey, lateral
nTPM: 44.5
2053 Male, age 18, unknown 50.8
2272 Male, age 74, both hemispheres 48.4
2140 Male, age 76, both hemispheres 34.2
Pretectal area
nTPM: 49.2
2316 Male, age 76, right hemisphere 56.5
2825 Male, age 18, unknown 55.4
2407 Male, age 75, both hemispheres 54.5
2007 Male, age 72, unknown 51.7
1815 Male, age 53, unknown 51.0
2667 Female, age 75, unknown 49.9
1816 Male, age 51, unknown 49.0
2224 Female, age 72, unknown 47.8
1944 Female, age 72, unknown 44.2
1817 Female, age 42, unknown 44.1
2273 Male, age 74, both hemispheres 36.7
Red nucleus
nTPM: 64.4
2823 Male, age 76, right hemisphere 96.5
2588 Male, age 74, left hemisphere 84.0
1904 Male, age 53, unknown 67.9
2503 Female, age 72, unknown 65.5
1865 Male, age 51, unknown 64.1
2584 Male, age 75, left hemisphere 63.4
2769 Male, age 72, unknown 62.7
2227 Male, age 72, unknown 62.1
1821 Female, age 72, unknown 54.2
2785 Male, age 18, unknown 52.6
2725 Female, age 75, unknown 49.8
1954 Female, age 42, unknown 49.7
Substantia nigra
nTPM: 54.5
1916 Female, age 42, unknown 66.3
1851 Male, age 51, unknown 61.6
2590 Female, age 75, unknown 59.6
2409 Female, age 72, unknown 57.0
2699 Male, age 18, unknown 54.9
1941 Male, age 53, unknown 54.3
2241 Male, age 72, unknown 50.9
2583 Male, age 75, right hemisphere 50.2
1889 Female, age 72, unknown 49.2
2665 Male, age 74, both hemispheres 40.7
Superior colliculus
nTPM: 52.4
1895 Male, age 76, right hemisphere 65.9
2668 Female, age 75, unknown 57.2
2261 Male, age 18, unknown 54.7
1796 Male, age 53, unknown 52.5
1913 Female, age 42, unknown 50.9
1995 Male, age 72, unknown 50.6
1839 Male, age 51, unknown 49.4
2587 Male, age 74, left hemisphere 48.6
2087 Female, age 72, unknown 48.1
2664 Male, age 75, both hemispheres 46.3
Ventral tegmental area
nTPM: 56.4
2410 Female, age 72, unknown 73.0
2218 Male, age 76, both hemispheres 56.6
1915 Female, age 42, unknown 52.9
1942 Male, age 51, unknown 52.9
2223 Female, age 72, unknown 51.7
2021 Male, age 53, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.9
Samples: 139

Max nTPM: 64.1
Min nTPM: 5.0
Std nTPM: 11.7
Median nTPM: 23.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 58.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 57.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 53.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 47.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 46.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 41.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 41.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 41.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.2
FF:10158-103A5 76 years, female 89.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.4
Samples: 4

Max nTPM: 54.4
Min nTPM: 24.7
Sample A Female 49.3
Sample B Female 29.0
Sample C Male 54.4
Sample D Male 24.7
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 54.3
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 27.6
Sample C Male 54.3
Sample D Male 33.2
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 26.1
Min nTPM: 21.1
Sample B Female 21.1
Sample C Male 25.6
Sample D Male 26.1
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 40.1
Min nTPM: 22.3
Sample A Female 28.0
Sample B Female 22.3
Sample C Male 40.1
Sample D Male 32.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 45.4
Min nTPM: 39.7
Sample A Male 42.4
Sample B Male 39.7
Sample C Female 45.4
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
532674 Antisense, RP_040825_01_C09, Mouse strain C57BL/6J (56 days, male) 3.2

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