MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:77.4 nTPM
GTEx:38.0 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:20.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.2
1870 Female, age 42, unknown 91.0
1830 Male, age 51, unknown 82.8
2411 Female, age 72, unknown 76.2
2019 Male, age 18, unknown 75.0
2586 Male, age 75, left hemisphere 73.6
1833 Male, age 53, unknown 72.0
2666 Male, age 74, left hemisphere 57.4
2828 Female, age 72, unknown 56.1
1827 Male, age 72, unknown 50.5
2219 Male, age 76, both hemispheres 47.9
Dorsal raphe nucleus
nTPM: 58.4
2750 Male, age 76, both hemispheres 95.2
1828 Male, age 53, unknown 54.5
2047 Male, age 72, unknown 52.1
2016 Female, age 72, unknown 49.9
2298 Female, age 72, unknown 40.2
Inferior colliculus
nTPM: 46.4
1890 Male, age 53, unknown 53.8
1848 Female, age 42, unknown 50.4
2849 Male, age 72, unknown 43.2
2097 Female, age 72, unknown 38.3
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Periaquaductal grey, anterior
nTPM: 48.9
1947 Male, age 18, unknown 53.4
2502 Female, age 75, unknown 49.2
1795 Male, age 51, unknown 44.1
Periaquaductal grey, dorsal
nTPM: 45.3
1831 Male, age 72, unknown 55.4
2464 Female, age 72, unknown 48.7
2850 Male, age 76, both hemispheres 41.5
1840 Male, age 53, unknown 35.5
Periaquaductal grey, lateral
nTPM: 53.2
2053 Male, age 18, unknown 55.5
2272 Male, age 74, both hemispheres 52.4
2140 Male, age 76, both hemispheres 51.6
Pretectal area
nTPM: 50.4
2407 Male, age 75, both hemispheres 60.5
2316 Male, age 76, right hemisphere 58.6
2667 Female, age 75, unknown 57.1
2825 Male, age 18, unknown 53.2
2273 Male, age 74, both hemispheres 52.8
1815 Male, age 53, unknown 51.9
2007 Male, age 72, unknown 48.6
1817 Female, age 42, unknown 47.7
2224 Female, age 72, unknown 42.9
1944 Female, age 72, unknown 41.0
1816 Male, age 51, unknown 39.8
Red nucleus
nTPM: 77.4
1865 Male, age 51, unknown 93.3
2823 Male, age 76, right hemisphere 86.1
2769 Male, age 72, unknown 85.8
2227 Male, age 72, unknown 84.7
2588 Male, age 74, left hemisphere 83.3
2584 Male, age 75, left hemisphere 80.8
1904 Male, age 53, unknown 79.6
1821 Female, age 72, unknown 76.8
2785 Male, age 18, unknown 71.1
1954 Female, age 42, unknown 69.9
2503 Female, age 72, unknown 60.7
2725 Female, age 75, unknown 56.8
Substantia nigra
nTPM: 55.1
2590 Female, age 75, unknown 66.7
2583 Male, age 75, right hemisphere 66.6
1941 Male, age 53, unknown 59.6
1851 Male, age 51, unknown 57.9
1889 Female, age 72, unknown 57.4
2699 Male, age 18, unknown 56.2
2665 Male, age 74, both hemispheres 49.5
2409 Female, age 72, unknown 46.9
1916 Female, age 42, unknown 45.1
2241 Male, age 72, unknown 44.5
Superior colliculus
nTPM: 59.3
1913 Female, age 42, unknown 94.8
1995 Male, age 72, unknown 71.8
2587 Male, age 74, left hemisphere 60.7
2664 Male, age 75, both hemispheres 56.4
1895 Male, age 76, right hemisphere 56.2
2668 Female, age 75, unknown 55.4
1839 Male, age 51, unknown 53.2
2087 Female, age 72, unknown 51.2
1796 Male, age 53, unknown 48.8
2261 Male, age 18, unknown 44.3
Ventral tegmental area
nTPM: 65.3
2223 Female, age 72, unknown 96.1
2021 Male, age 53, unknown 65.6
2218 Male, age 76, both hemispheres 63.3
2410 Female, age 72, unknown 60.1
1942 Male, age 51, unknown 60.0
1915 Female, age 42, unknown 46.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 122.5
Min nTPM: 14.3
Std nTPM: 16.8
Median nTPM: 34.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 122.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 117.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 100.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 95.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 81.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 67.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 66.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 65.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 65.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 62.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 55.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.7
FF:10158-103A5 76 years, female 50.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.5
Sample A Female 9.5
Sample B Female 12.7
Sample C Male 8.5
Sample D Male 12.9
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 6.3
Sample A Female 20.7
Sample B Female 7.9
Sample C Male 8.3
Sample D Male 6.3
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 8.8
Min nTPM: 7.9
Sample B Female 7.9
Sample C Male 8.8
Sample D Male 8.1
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.8
Sample A Female 11.2
Sample B Female 13.3
Sample C Male 8.8
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.3
Sample A Male 19.3
Sample B Male 18.3
Sample C Female 20.3
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69838432 Antisense, RP_050303_01_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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