MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:110.1 nTPM
HPA Brain:56.5 nTPM
GTEx:110.1 nTPM
FANTOM5:141.8 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:21.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.9
1870 Female, age 42, unknown 46.7
2828 Female, age 72, unknown 43.5
2666 Male, age 74, left hemisphere 41.5
2586 Male, age 75, left hemisphere 37.4
2411 Female, age 72, unknown 35.2
2019 Male, age 18, unknown 29.9
1827 Male, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 26.5
1830 Male, age 51, unknown 26.3
1833 Male, age 53, unknown 24.3
Dorsal raphe nucleus
nTPM: 40.5
1828 Male, age 53, unknown 51.2
2047 Male, age 72, unknown 48.3
2016 Female, age 72, unknown 39.3
2750 Male, age 76, both hemispheres 35.6
2298 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 54.8
1890 Male, age 53, unknown 71.1
2849 Male, age 72, unknown 53.5
1848 Female, age 42, unknown 50.5
2097 Female, age 72, unknown 44.1
Median raphe nucleus
nTPM: 56.5
2220 Male, age 76, midline 56.5
Periaquaductal grey, anterior
nTPM: 22.0
2502 Female, age 75, unknown 33.4
1795 Male, age 51, unknown 25.6
1947 Male, age 18, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 44.0
2850 Male, age 76, both hemispheres 51.7
1840 Male, age 53, unknown 48.3
1831 Male, age 72, unknown 39.0
2464 Female, age 72, unknown 37.0
Periaquaductal grey, lateral
nTPM: 30.4
2140 Male, age 76, both hemispheres 55.3
2053 Male, age 18, unknown 23.2
2272 Male, age 74, both hemispheres 12.8
Pretectal area
nTPM: 37.7
1816 Male, age 51, unknown 56.5
2667 Female, age 75, unknown 55.0
1817 Female, age 42, unknown 46.6
2007 Male, age 72, unknown 44.1
2316 Male, age 76, right hemisphere 39.6
1944 Female, age 72, unknown 37.6
2825 Male, age 18, unknown 35.2
1815 Male, age 53, unknown 29.5
2224 Female, age 72, unknown 24.1
2407 Male, age 75, both hemispheres 23.4
2273 Male, age 74, both hemispheres 22.9
Red nucleus
nTPM: 39.7
1821 Female, age 72, unknown 64.9
1954 Female, age 42, unknown 64.5
2588 Male, age 74, left hemisphere 49.3
2503 Female, age 72, unknown 48.7
2785 Male, age 18, unknown 39.9
1904 Male, age 53, unknown 37.4
2769 Male, age 72, unknown 35.2
2584 Male, age 75, left hemisphere 30.0
2823 Male, age 76, right hemisphere 29.6
2227 Male, age 72, unknown 27.1
1865 Male, age 51, unknown 27.0
2725 Female, age 75, unknown 22.9
Substantia nigra
nTPM: 44.1
2699 Male, age 18, unknown 100.2
2665 Male, age 74, both hemispheres 49.9
1851 Male, age 51, unknown 44.9
1889 Female, age 72, unknown 43.2
2241 Male, age 72, unknown 41.5
2409 Female, age 72, unknown 35.6
1916 Female, age 42, unknown 35.4
1941 Male, age 53, unknown 32.3
2583 Male, age 75, right hemisphere 31.8
2590 Female, age 75, unknown 26.0
Superior colliculus
nTPM: 33.5
1995 Male, age 72, unknown 43.0
2261 Male, age 18, unknown 39.8
1913 Female, age 42, unknown 37.9
1839 Male, age 51, unknown 34.8
1895 Male, age 76, right hemisphere 31.8
2587 Male, age 74, left hemisphere 31.7
2668 Female, age 75, unknown 30.8
1796 Male, age 53, unknown 30.2
2087 Female, age 72, unknown 29.1
2664 Male, age 75, both hemispheres 25.8
Ventral tegmental area
nTPM: 39.5
2021 Male, age 53, unknown 47.7
2410 Female, age 72, unknown 44.8
2218 Male, age 76, both hemispheres 39.8
2223 Female, age 72, unknown 39.2
1915 Female, age 42, unknown 38.5
1942 Male, age 51, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.1
Samples: 139

Max nTPM: 749.8
Min nTPM: 26.3
Std nTPM: 82.7
Median nTPM: 89.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 749.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 352.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 273.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 255.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 248.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 233.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 229.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 229.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 224.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 220.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 218.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.8
FF:10158-103A5 76 years, female 141.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.6
Samples: 4

Max nTPM: 78.8
Min nTPM: 48.6
Sample A Female 57.1
Sample B Female 78.8
Sample C Male 53.8
Sample D Male 48.6
Midbrain
nTPM: 45.7
Samples: 4

Max nTPM: 58.1
Min nTPM: 32.3
Sample A Female 58.1
Sample B Female 47.9
Sample C Male 44.3
Sample D Male 32.3
Periaqueductal gray
nTPM: 44.7
Samples: 3

Max nTPM: 48.7
Min nTPM: 37.1
Sample B Female 48.7
Sample C Male 48.4
Sample D Male 37.1
Superior colliculi
nTPM: 63.2
Samples: 4

Max nTPM: 102.0
Min nTPM: 39.6
Sample A Female 64.9
Sample B Female 102.0
Sample C Male 46.3
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.1
Sample A Male 21.5
Sample B Male 20.7
Sample C Female 18.1
Sample D Female 27.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
71496423 Antisense, RP_050913_04_E06, Mouse strain C57BL/6J (56 days, male) 1.4

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