MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.2 nTPM
HPA Brain:19.7 nTPM
GTEx:52.2 nTPM
FANTOM5:158.9 Scaled Tags Per Million
Pig:86.7 nTPM
Mouse:87.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.4
2219 Male, age 76, both hemispheres 20.9
1870 Female, age 42, unknown 20.5
1833 Male, age 53, unknown 18.7
1830 Male, age 51, unknown 16.5
1827 Male, age 72, unknown 14.3
2411 Female, age 72, unknown 13.9
2019 Male, age 18, unknown 12.9
2828 Female, age 72, unknown 12.9
2666 Male, age 74, left hemisphere 12.0
2586 Male, age 75, left hemisphere 11.8
Dorsal raphe nucleus
nTPM: 16.4
2750 Male, age 76, both hemispheres 20.4
2016 Female, age 72, unknown 16.7
2298 Female, age 72, unknown 15.8
1828 Male, age 53, unknown 14.8
2047 Male, age 72, unknown 14.5
Inferior colliculus
nTPM: 15.2
2849 Male, age 72, unknown 18.3
2097 Female, age 72, unknown 15.6
1848 Female, age 42, unknown 14.6
1890 Male, age 53, unknown 12.3
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 14.0
2502 Female, age 75, unknown 16.4
1947 Male, age 18, unknown 14.1
1795 Male, age 51, unknown 11.6
Periaquaductal grey, dorsal
nTPM: 15.8
2850 Male, age 76, both hemispheres 22.4
1840 Male, age 53, unknown 14.7
2464 Female, age 72, unknown 14.6
1831 Male, age 72, unknown 11.5
Periaquaductal grey, lateral
nTPM: 14.5
2272 Male, age 74, both hemispheres 17.9
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 11.5
Pretectal area
nTPM: 16.1
2224 Female, age 72, unknown 22.6
2667 Female, age 75, unknown 19.0
2273 Male, age 74, both hemispheres 17.7
1815 Male, age 53, unknown 17.0
1816 Male, age 51, unknown 16.5
1817 Female, age 42, unknown 15.4
2825 Male, age 18, unknown 15.2
2316 Male, age 76, right hemisphere 14.2
2007 Male, age 72, unknown 13.5
2407 Male, age 75, both hemispheres 13.5
1944 Female, age 72, unknown 12.2
Red nucleus
nTPM: 17.6
1821 Female, age 72, unknown 23.5
1954 Female, age 42, unknown 20.9
1904 Male, age 53, unknown 19.5
2227 Male, age 72, unknown 19.4
2503 Female, age 72, unknown 19.0
2785 Male, age 18, unknown 18.0
2769 Male, age 72, unknown 17.7
2823 Male, age 76, right hemisphere 17.4
2725 Female, age 75, unknown 17.1
1865 Male, age 51, unknown 16.9
2588 Male, age 74, left hemisphere 12.0
2584 Male, age 75, left hemisphere 10.0
Substantia nigra
nTPM: 14.6
2699 Male, age 18, unknown 18.7
2241 Male, age 72, unknown 16.6
1916 Female, age 42, unknown 16.5
1941 Male, age 53, unknown 16.2
1851 Male, age 51, unknown 15.8
2665 Male, age 74, both hemispheres 15.8
1889 Female, age 72, unknown 14.9
2583 Male, age 75, right hemisphere 13.9
2590 Female, age 75, unknown 9.7
2409 Female, age 72, unknown 8.0
Superior colliculus
nTPM: 14.3
1913 Female, age 42, unknown 17.2
1995 Male, age 72, unknown 16.1
2087 Female, age 72, unknown 15.9
2668 Female, age 75, unknown 14.8
2587 Male, age 74, left hemisphere 14.5
1839 Male, age 51, unknown 14.1
1895 Male, age 76, right hemisphere 13.8
2261 Male, age 18, unknown 12.7
1796 Male, age 53, unknown 12.4
2664 Male, age 75, both hemispheres 11.6
Ventral tegmental area
nTPM: 15.4
2223 Female, age 72, unknown 18.4
2410 Female, age 72, unknown 17.7
1942 Male, age 51, unknown 15.0
2021 Male, age 53, unknown 14.5
1915 Female, age 42, unknown 14.1
2218 Male, age 76, both hemispheres 13.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.2
Samples: 139

Max nTPM: 102.8
Min nTPM: 31.3
Std nTPM: 13.2
Median nTPM: 48.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 102.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 101.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 101.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 92.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 85.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 77.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 76.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 74.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 73.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.9
FF:10158-103A5 76 years, female 158.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.1
Samples: 4

Max nTPM: 90.6
Min nTPM: 64.7
Sample A Female 90.6
Sample B Female 64.7
Sample C Male 70.7
Sample D Male 90.3
Midbrain
nTPM: 86.7
Samples: 4

Max nTPM: 134.4
Min nTPM: 57.6
Sample A Female 134.4
Sample B Female 93.3
Sample C Male 61.4
Sample D Male 57.6
Periaqueductal gray
nTPM: 67.3
Samples: 3

Max nTPM: 76.2
Min nTPM: 59.0
Sample B Female 76.2
Sample C Male 59.0
Sample D Male 66.8
Superior colliculi
nTPM: 68.4
Samples: 4

Max nTPM: 81.0
Min nTPM: 52.1
Sample A Female 81.0
Sample B Female 52.1
Sample C Male 70.2
Sample D Male 70.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.6
Samples: 4

Max nTPM: 92.4
Min nTPM: 80.6
Sample A Male 80.6
Sample B Male 89.4
Sample C Female 92.4
Sample D Female 87.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68151447 Antisense, RP_041116_01_C06, Mouse strain C57BL/6J (56 days, male) 0.4

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