MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA Brain:117.7 nTPM
GTEx:50.4 nTPM
FANTOM5:258.8 Scaled Tags Per Million
Pig:197.1 nTPM
Mouse:194.9 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.7
2586 Male, age 75, left hemisphere 190.3
2666 Male, age 74, left hemisphere 167.4
2411 Female, age 72, unknown 132.9
2019 Male, age 18, unknown 122.6
1870 Female, age 42, unknown 111.9
1827 Male, age 72, unknown 99.6
1833 Male, age 53, unknown 95.3
2219 Male, age 76, both hemispheres 94.0
1830 Male, age 51, unknown 93.0
2828 Female, age 72, unknown 70.0
Dorsal raphe nucleus
nTPM: 88.5
2750 Male, age 76, both hemispheres 134.2
1828 Male, age 53, unknown 92.6
2047 Male, age 72, unknown 86.5
2298 Female, age 72, unknown 66.4
2016 Female, age 72, unknown 62.8
Inferior colliculus
nTPM: 101.7
2097 Female, age 72, unknown 111.9
1890 Male, age 53, unknown 106.0
2849 Male, age 72, unknown 95.1
1848 Female, age 42, unknown 93.6
Median raphe nucleus
nTPM: 101.8
2220 Male, age 76, midline 101.8
Periaquaductal grey, anterior
nTPM: 98.5
2502 Female, age 75, unknown 123.1
1947 Male, age 18, unknown 90.1
1795 Male, age 51, unknown 82.2
Periaquaductal grey, dorsal
nTPM: 75.9
2464 Female, age 72, unknown 107.7
1831 Male, age 72, unknown 74.5
1840 Male, age 53, unknown 72.3
2850 Male, age 76, both hemispheres 49.1
Periaquaductal grey, lateral
nTPM: 47.8
2053 Male, age 18, unknown 68.6
2272 Male, age 74, both hemispheres 40.1
2140 Male, age 76, both hemispheres 34.5
Pretectal area
nTPM: 95.1
2007 Male, age 72, unknown 142.9
1816 Male, age 51, unknown 137.0
1944 Female, age 72, unknown 126.0
1817 Female, age 42, unknown 121.5
1815 Male, age 53, unknown 119.2
2407 Male, age 75, both hemispheres 81.1
2825 Male, age 18, unknown 77.2
2224 Female, age 72, unknown 71.4
2667 Female, age 75, unknown 64.9
2316 Male, age 76, right hemisphere 63.1
2273 Male, age 74, both hemispheres 42.0
Red nucleus
nTPM: 115.9
1821 Female, age 72, unknown 151.6
2588 Male, age 74, left hemisphere 132.4
2785 Male, age 18, unknown 123.5
2503 Female, age 72, unknown 122.7
2725 Female, age 75, unknown 118.3
1904 Male, age 53, unknown 113.8
2769 Male, age 72, unknown 111.5
1865 Male, age 51, unknown 111.2
2227 Male, age 72, unknown 109.8
1954 Female, age 42, unknown 108.3
2584 Male, age 75, left hemisphere 103.1
2823 Male, age 76, right hemisphere 84.5
Substantia nigra
nTPM: 96.1
1889 Female, age 72, unknown 130.2
1851 Male, age 51, unknown 114.2
1916 Female, age 42, unknown 111.2
1941 Male, age 53, unknown 104.5
2665 Male, age 74, both hemispheres 94.2
2241 Male, age 72, unknown 91.7
2583 Male, age 75, right hemisphere 88.5
2409 Female, age 72, unknown 77.4
2699 Male, age 18, unknown 75.5
2590 Female, age 75, unknown 73.7
Superior colliculus
nTPM: 108.9
2587 Male, age 74, left hemisphere 149.2
2668 Female, age 75, unknown 143.6
1895 Male, age 76, right hemisphere 118.6
2664 Male, age 75, both hemispheres 112.5
1913 Female, age 42, unknown 101.5
1839 Male, age 51, unknown 98.4
2261 Male, age 18, unknown 95.1
2087 Female, age 72, unknown 91.7
1796 Male, age 53, unknown 91.5
1995 Male, age 72, unknown 86.5
Ventral tegmental area
nTPM: 105.2
2223 Female, age 72, unknown 148.0
2410 Female, age 72, unknown 103.8
2218 Male, age 76, both hemispheres 102.6
1915 Female, age 42, unknown 100.0
1942 Male, age 51, unknown 89.6
2021 Male, age 53, unknown 87.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.4
Samples: 139

Max nTPM: 157.5
Min nTPM: 6.2
Std nTPM: 28.1
Median nTPM: 43.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 157.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 143.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 117.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 115.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 113.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 110.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 108.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 104.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 102.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 101.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 97.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 258.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 258.8
FF:10158-103A5 76 years, female 258.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 197.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.4
Samples: 4

Max nTPM: 156.0
Min nTPM: 91.5
Sample A Female 156.0
Sample B Female 91.5
Sample C Male 144.9
Sample D Male 137.1
Midbrain
nTPM: 197.1
Samples: 4

Max nTPM: 274.3
Min nTPM: 121.3
Sample A Female 274.3
Sample B Female 121.3
Sample C Male 214.5
Sample D Male 178.1
Periaqueductal gray
nTPM: 124.3
Samples: 3

Max nTPM: 133.2
Min nTPM: 117.9
Sample B Female 121.7
Sample C Male 133.2
Sample D Male 117.9
Superior colliculi
nTPM: 153.4
Samples: 4

Max nTPM: 190.2
Min nTPM: 67.6
Sample A Female 168.9
Sample B Female 67.6
Sample C Male 190.2
Sample D Male 186.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 194.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 195.0
Samples: 4

Max nTPM: 210.8
Min nTPM: 178.5
Sample A Male 178.5
Sample B Male 194.3
Sample C Female 210.8
Sample D Female 196.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
74511818 Antisense, RP_060220_03_B06, Mouse strain C57BL/6J (56 days, male) 9.2
69735801 Antisense, RP_050503_03_E12, Mouse strain C57BL/6J (56 days, male) 7.7

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