MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA Brain:33.1 nTPM
GTEx:14.0 nTPM
FANTOM5:105.8 Scaled Tags Per Million
Pig:120.5 nTPM
Mouse:24.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
2219 Male, age 76, both hemispheres 93.9
1830 Male, age 51, unknown 25.3
2828 Female, age 72, unknown 22.1
2019 Male, age 18, unknown 21.0
1833 Male, age 53, unknown 19.8
1827 Male, age 72, unknown 17.9
2666 Male, age 74, left hemisphere 16.9
1870 Female, age 42, unknown 16.4
2586 Male, age 75, left hemisphere 15.2
2411 Female, age 72, unknown 14.3
Dorsal raphe nucleus
nTPM: 23.4
2016 Female, age 72, unknown 27.9
2750 Male, age 76, both hemispheres 26.8
1828 Male, age 53, unknown 22.9
2298 Female, age 72, unknown 22.6
2047 Male, age 72, unknown 16.9
Inferior colliculus
nTPM: 20.1
2097 Female, age 72, unknown 22.4
2849 Male, age 72, unknown 21.2
1890 Male, age 53, unknown 19.7
1848 Female, age 42, unknown 16.9
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Periaquaductal grey, anterior
nTPM: 15.4
2502 Female, age 75, unknown 16.5
1795 Male, age 51, unknown 15.8
1947 Male, age 18, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 23.4
1831 Male, age 72, unknown 32.2
2850 Male, age 76, both hemispheres 23.6
1840 Male, age 53, unknown 22.0
2464 Female, age 72, unknown 15.9
Periaquaductal grey, lateral
nTPM: 22.1
2272 Male, age 74, both hemispheres 25.4
2053 Male, age 18, unknown 20.9
2140 Male, age 76, both hemispheres 20.0
Pretectal area
nTPM: 19.8
2407 Male, age 75, both hemispheres 32.8
2316 Male, age 76, right hemisphere 31.0
2273 Male, age 74, both hemispheres 24.3
1815 Male, age 53, unknown 23.2
1817 Female, age 42, unknown 19.2
2007 Male, age 72, unknown 18.0
1944 Female, age 72, unknown 17.8
2825 Male, age 18, unknown 17.0
2667 Female, age 75, unknown 15.3
1816 Male, age 51, unknown 9.8
2224 Female, age 72, unknown 9.4
Red nucleus
nTPM: 20.4
1865 Male, age 51, unknown 31.6
2503 Female, age 72, unknown 30.9
1904 Male, age 53, unknown 25.4
2584 Male, age 75, left hemisphere 20.9
2785 Male, age 18, unknown 20.5
2227 Male, age 72, unknown 20.0
2769 Male, age 72, unknown 19.5
2823 Male, age 76, right hemisphere 19.1
2725 Female, age 75, unknown 16.4
1821 Female, age 72, unknown 15.8
1954 Female, age 42, unknown 15.2
2588 Male, age 74, left hemisphere 9.7
Substantia nigra
nTPM: 33.1
2699 Male, age 18, unknown 55.8
2590 Female, age 75, unknown 47.3
2665 Male, age 74, both hemispheres 43.6
2409 Female, age 72, unknown 40.6
2583 Male, age 75, right hemisphere 29.2
2241 Male, age 72, unknown 27.9
1851 Male, age 51, unknown 26.9
1941 Male, age 53, unknown 23.2
1916 Female, age 42, unknown 23.1
1889 Female, age 72, unknown 13.4
Superior colliculus
nTPM: 22.1
1913 Female, age 42, unknown 35.8
2587 Male, age 74, left hemisphere 26.3
1995 Male, age 72, unknown 26.2
2664 Male, age 75, both hemispheres 25.7
1839 Male, age 51, unknown 21.2
2668 Female, age 75, unknown 18.5
1796 Male, age 53, unknown 18.2
2087 Female, age 72, unknown 17.6
1895 Male, age 76, right hemisphere 17.0
2261 Male, age 18, unknown 14.6
Ventral tegmental area
nTPM: 25.8
2410 Female, age 72, unknown 29.7
1942 Male, age 51, unknown 28.3
2021 Male, age 53, unknown 28.3
2218 Male, age 76, both hemispheres 28.1
1915 Female, age 42, unknown 21.4
2223 Female, age 72, unknown 18.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.0
Samples: 139

Max nTPM: 141.7
Min nTPM: 0.5
Std nTPM: 17.3
Median nTPM: 8.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 141.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 82.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 59.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 58.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 55.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 44.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 37.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.8
FF:10158-103A5 76 years, female 105.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 120.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 100.2
Samples: 4

Max nTPM: 111.4
Min nTPM: 90.6
Sample A Female 111.4
Sample B Female 90.6
Sample C Male 103.1
Sample D Male 95.6
Midbrain
nTPM: 79.2
Samples: 4

Max nTPM: 124.0
Min nTPM: 29.9
Sample A Female 124.0
Sample B Female 112.9
Sample C Male 29.9
Sample D Male 49.8
Periaqueductal gray
nTPM: 120.6
Samples: 3

Max nTPM: 152.0
Min nTPM: 101.2
Sample B Female 108.5
Sample C Male 152.0
Sample D Male 101.2
Superior colliculi
nTPM: 55.4
Samples: 4

Max nTPM: 79.7
Min nTPM: 32.4
Sample A Female 79.7
Sample B Female 32.4
Sample C Male 47.4
Sample D Male 62.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 23.8
Sample A Male 25.5
Sample B Male 24.5
Sample C Female 23.8
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
1605 Antisense, RP_040428_01_B04, Mouse strain C57BL/6J (56 days, male) 0.3

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