MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA Brain:124.0 nTPM
GTEx:16.3 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:11.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 124.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.8
2586 Male, age 75, left hemisphere 129.0
1830 Male, age 51, unknown 120.7
2828 Female, age 72, unknown 120.6
1833 Male, age 53, unknown 119.7
2019 Male, age 18, unknown 119.5
2666 Male, age 74, left hemisphere 110.3
1827 Male, age 72, unknown 99.3
1870 Female, age 42, unknown 98.9
2411 Female, age 72, unknown 97.9
2219 Male, age 76, both hemispheres 92.0
Dorsal raphe nucleus
nTPM: 100.0
2750 Male, age 76, both hemispheres 111.6
2016 Female, age 72, unknown 108.3
2047 Male, age 72, unknown 98.3
2298 Female, age 72, unknown 93.8
1828 Male, age 53, unknown 88.2
Inferior colliculus
nTPM: 77.4
1890 Male, age 53, unknown 86.8
2849 Male, age 72, unknown 80.7
1848 Female, age 42, unknown 78.8
2097 Female, age 72, unknown 63.5
Median raphe nucleus
nTPM: 124.0
2220 Male, age 76, midline 124.0
Periaquaductal grey, anterior
nTPM: 110.0
1947 Male, age 18, unknown 124.4
2502 Female, age 75, unknown 106.1
1795 Male, age 51, unknown 99.4
Periaquaductal grey, dorsal
nTPM: 88.5
2850 Male, age 76, both hemispheres 114.8
2464 Female, age 72, unknown 93.9
1840 Male, age 53, unknown 75.5
1831 Male, age 72, unknown 69.8
Periaquaductal grey, lateral
nTPM: 109.5
2140 Male, age 76, both hemispheres 129.7
2272 Male, age 74, both hemispheres 119.7
2053 Male, age 18, unknown 79.1
Pretectal area
nTPM: 92.7
2273 Male, age 74, both hemispheres 106.2
2316 Male, age 76, right hemisphere 99.6
2007 Male, age 72, unknown 98.7
2407 Male, age 75, both hemispheres 98.0
1815 Male, age 53, unknown 97.4
2667 Female, age 75, unknown 94.9
2825 Male, age 18, unknown 90.6
1944 Female, age 72, unknown 90.2
1816 Male, age 51, unknown 84.9
1817 Female, age 42, unknown 79.8
2224 Female, age 72, unknown 79.4
Red nucleus
nTPM: 120.7
1904 Male, age 53, unknown 140.2
1865 Male, age 51, unknown 137.6
2227 Male, age 72, unknown 131.4
2769 Male, age 72, unknown 131.4
2785 Male, age 18, unknown 124.9
1954 Female, age 42, unknown 123.7
2823 Male, age 76, right hemisphere 120.6
2725 Female, age 75, unknown 114.6
2503 Female, age 72, unknown 110.4
1821 Female, age 72, unknown 110.0
2588 Male, age 74, left hemisphere 104.5
2584 Male, age 75, left hemisphere 99.1
Substantia nigra
nTPM: 114.5
2590 Female, age 75, unknown 133.7
1916 Female, age 42, unknown 126.7
2699 Male, age 18, unknown 126.0
2583 Male, age 75, right hemisphere 119.8
1851 Male, age 51, unknown 119.4
2665 Male, age 74, both hemispheres 116.7
1941 Male, age 53, unknown 111.7
2409 Female, age 72, unknown 104.6
2241 Male, age 72, unknown 103.3
1889 Female, age 72, unknown 82.9
Superior colliculus
nTPM: 95.3
1995 Male, age 72, unknown 108.4
2664 Male, age 75, both hemispheres 108.3
1913 Female, age 42, unknown 105.6
2587 Male, age 74, left hemisphere 102.4
1796 Male, age 53, unknown 95.0
2261 Male, age 18, unknown 91.8
2087 Female, age 72, unknown 88.1
1839 Male, age 51, unknown 84.9
2668 Female, age 75, unknown 84.7
1895 Male, age 76, right hemisphere 83.7
Ventral tegmental area
nTPM: 99.6
2218 Male, age 76, both hemispheres 106.4
2410 Female, age 72, unknown 102.4
2223 Female, age 72, unknown 101.6
1942 Male, age 51, unknown 100.5
1915 Female, age 42, unknown 99.8
2021 Male, age 53, unknown 86.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 59.0
Min nTPM: 4.8
Std nTPM: 8.3
Median nTPM: 14.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 45.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 33.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 32.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 29.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 28.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 6.6
Sample A Female 19.3
Sample B Female 12.1
Sample C Male 17.5
Sample D Male 6.6
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 11.4
Sample C Male 13.4
Sample D Male 10.9
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 13.1
Min nTPM: 8.2
Sample B Female 9.3
Sample C Male 13.1
Sample D Male 8.2
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 8.1
Sample A Female 10.4
Sample B Female 8.3
Sample C Male 12.2
Sample D Male 8.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 11.3
Sample C Female 12.0
Sample D Female 11.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70238633 Antisense, RP_050526_03_E12, Mouse strain C57BL/6J (56 days, male) 0.1
73817443 Antisense, RP_051101_01_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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