MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:242.5 nTPM
HPA Brain:458.4 nTPM
GTEx:242.5 nTPM
FANTOM5:224.3 Scaled Tags Per Million
Pig:245.1 nTPM
Mouse:269.6 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 458.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 288.9
2828 Female, age 72, unknown 418.8
2586 Male, age 75, left hemisphere 377.3
1827 Male, age 72, unknown 341.1
1870 Female, age 42, unknown 320.8
1833 Male, age 53, unknown 284.5
2411 Female, age 72, unknown 268.8
2666 Male, age 74, left hemisphere 258.5
1830 Male, age 51, unknown 236.0
2019 Male, age 18, unknown 203.3
2219 Male, age 76, both hemispheres 180.0
Dorsal raphe nucleus
nTPM: 409.5
2016 Female, age 72, unknown 531.4
1828 Male, age 53, unknown 461.3
2298 Female, age 72, unknown 417.6
2047 Male, age 72, unknown 377.3
2750 Male, age 76, both hemispheres 259.8
Inferior colliculus
nTPM: 387.1
1848 Female, age 42, unknown 444.8
2849 Male, age 72, unknown 408.9
2097 Female, age 72, unknown 372.5
1890 Male, age 53, unknown 322.0
Median raphe nucleus
nTPM: 274.8
2220 Male, age 76, midline 274.8
Periaquaductal grey, anterior
nTPM: 337.4
1795 Male, age 51, unknown 357.7
2502 Female, age 75, unknown 337.6
1947 Male, age 18, unknown 317.1
Periaquaductal grey, dorsal
nTPM: 458.4
1840 Male, age 53, unknown 554.5
2850 Male, age 76, both hemispheres 524.8
2464 Female, age 72, unknown 384.6
1831 Male, age 72, unknown 369.6
Periaquaductal grey, lateral
nTPM: 427.4
2140 Male, age 76, both hemispheres 550.2
2053 Male, age 18, unknown 463.0
2272 Male, age 74, both hemispheres 268.9
Pretectal area
nTPM: 361.6
2224 Female, age 72, unknown 459.5
2667 Female, age 75, unknown 458.9
1944 Female, age 72, unknown 406.5
2273 Male, age 74, both hemispheres 391.1
2316 Male, age 76, right hemisphere 376.4
1816 Male, age 51, unknown 374.2
2825 Male, age 18, unknown 365.8
1817 Female, age 42, unknown 342.9
1815 Male, age 53, unknown 304.0
2407 Male, age 75, both hemispheres 265.9
2007 Male, age 72, unknown 232.1
Red nucleus
nTPM: 285.1
1821 Female, age 72, unknown 339.1
2503 Female, age 72, unknown 335.0
1954 Female, age 42, unknown 334.4
2769 Male, age 72, unknown 331.7
2227 Male, age 72, unknown 331.1
2823 Male, age 76, right hemisphere 308.3
2725 Female, age 75, unknown 298.8
1904 Male, age 53, unknown 263.7
1865 Male, age 51, unknown 254.8
2588 Male, age 74, left hemisphere 239.2
2785 Male, age 18, unknown 195.2
2584 Male, age 75, left hemisphere 190.1
Substantia nigra
nTPM: 369.5
2699 Male, age 18, unknown 605.4
1916 Female, age 42, unknown 466.8
2241 Male, age 72, unknown 384.8
2409 Female, age 72, unknown 383.0
1851 Male, age 51, unknown 370.0
1889 Female, age 72, unknown 338.0
2590 Female, age 75, unknown 323.3
2665 Male, age 74, both hemispheres 317.0
1941 Male, age 53, unknown 260.0
2583 Male, age 75, right hemisphere 246.5
Superior colliculus
nTPM: 327.6
2087 Female, age 72, unknown 387.4
1796 Male, age 53, unknown 387.0
2664 Male, age 75, both hemispheres 369.3
1839 Male, age 51, unknown 356.6
2261 Male, age 18, unknown 343.7
1995 Male, age 72, unknown 326.0
1913 Female, age 42, unknown 295.6
2587 Male, age 74, left hemisphere 295.3
2668 Female, age 75, unknown 258.9
1895 Male, age 76, right hemisphere 256.4
Ventral tegmental area
nTPM: 339.7
2021 Male, age 53, unknown 394.3
1915 Female, age 42, unknown 384.1
2410 Female, age 72, unknown 353.2
1942 Male, age 51, unknown 342.7
2218 Male, age 76, both hemispheres 322.5
2223 Female, age 72, unknown 241.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 242.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 242.5
Samples: 139

Max nTPM: 821.0
Min nTPM: 53.1
Std nTPM: 131.8
Median nTPM: 213.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 821.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 723.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 593.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 585.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 572.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 547.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 536.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 518.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 483.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 477.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 471.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 224.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 224.3
FF:10158-103A5 76 years, female 224.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 245.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 229.0
Samples: 4

Max nTPM: 252.5
Min nTPM: 207.8
Sample A Female 229.6
Sample B Female 226.2
Sample C Male 207.8
Sample D Male 252.5
Midbrain
nTPM: 245.1
Samples: 4

Max nTPM: 279.7
Min nTPM: 195.4
Sample A Female 279.7
Sample B Female 279.6
Sample C Male 225.5
Sample D Male 195.4
Periaqueductal gray
nTPM: 244.3
Samples: 3

Max nTPM: 295.4
Min nTPM: 209.3
Sample B Female 295.4
Sample C Male 228.1
Sample D Male 209.3
Superior colliculi
nTPM: 237.1
Samples: 4

Max nTPM: 262.5
Min nTPM: 224.7
Sample A Female 262.5
Sample B Female 231.3
Sample C Male 230.0
Sample D Male 224.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 269.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.6
Samples: 4

Max nTPM: 281.8
Min nTPM: 261.4
Sample A Male 263.5
Sample B Male 261.4
Sample C Female 281.8
Sample D Female 271.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
69838759 Antisense, RP_050324_01_G12, Mouse strain C57BL/6J (56 days, male) 13.3

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