MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:14.8 nTPM
GTEx:15.2 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:3.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.3
1827 Male, age 72, unknown 12.3
2828 Female, age 72, unknown 11.3
2666 Male, age 74, left hemisphere 10.8
1870 Female, age 42, unknown 9.8
1830 Male, age 51, unknown 9.1
2019 Male, age 18, unknown 8.7
2411 Female, age 72, unknown 8.6
1833 Male, age 53, unknown 8.5
2219 Male, age 76, both hemispheres 7.6
2586 Male, age 75, left hemisphere 6.7
Dorsal raphe nucleus
nTPM: 11.0
2016 Female, age 72, unknown 17.0
1828 Male, age 53, unknown 11.4
2298 Female, age 72, unknown 10.9
2047 Male, age 72, unknown 8.5
2750 Male, age 76, both hemispheres 7.1
Inferior colliculus
nTPM: 7.6
1848 Female, age 42, unknown 8.1
2849 Male, age 72, unknown 8.0
1890 Male, age 53, unknown 7.3
2097 Female, age 72, unknown 7.0
Median raphe nucleus
nTPM: 8.3
2220 Male, age 76, midline 8.3
Periaquaductal grey, anterior
nTPM: 8.9
1795 Male, age 51, unknown 12.7
2502 Female, age 75, unknown 7.8
1947 Male, age 18, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 11.3
1831 Male, age 72, unknown 14.0
2850 Male, age 76, both hemispheres 13.1
1840 Male, age 53, unknown 9.0
2464 Female, age 72, unknown 8.9
Periaquaductal grey, lateral
nTPM: 14.8
2140 Male, age 76, both hemispheres 16.4
2053 Male, age 18, unknown 16.3
2272 Male, age 74, both hemispheres 11.7
Pretectal area
nTPM: 10.1
2224 Female, age 72, unknown 19.1
2316 Male, age 76, right hemisphere 16.3
2407 Male, age 75, both hemispheres 11.1
2273 Male, age 74, both hemispheres 10.7
1944 Female, age 72, unknown 9.5
2825 Male, age 18, unknown 9.1
2667 Female, age 75, unknown 8.9
1815 Male, age 53, unknown 7.8
1817 Female, age 42, unknown 7.0
1816 Male, age 51, unknown 6.0
2007 Male, age 72, unknown 6.0
Red nucleus
nTPM: 8.1
1865 Male, age 51, unknown 10.1
1904 Male, age 53, unknown 9.4
2725 Female, age 75, unknown 8.8
2785 Male, age 18, unknown 8.7
2227 Male, age 72, unknown 8.5
2769 Male, age 72, unknown 8.5
2503 Female, age 72, unknown 8.0
2584 Male, age 75, left hemisphere 7.7
2823 Male, age 76, right hemisphere 7.3
1954 Female, age 42, unknown 7.2
2588 Male, age 74, left hemisphere 7.1
1821 Female, age 72, unknown 6.1
Substantia nigra
nTPM: 12.4
2699 Male, age 18, unknown 18.5
2665 Male, age 74, both hemispheres 18.4
2409 Female, age 72, unknown 14.3
2590 Female, age 75, unknown 12.7
1916 Female, age 42, unknown 12.3
2583 Male, age 75, right hemisphere 11.7
1851 Male, age 51, unknown 11.2
2241 Male, age 72, unknown 10.9
1941 Male, age 53, unknown 8.9
1889 Female, age 72, unknown 5.6
Superior colliculus
nTPM: 9.1
1796 Male, age 53, unknown 11.1
1913 Female, age 42, unknown 11.1
2587 Male, age 74, left hemisphere 10.3
2664 Male, age 75, both hemispheres 9.7
1995 Male, age 72, unknown 9.4
1839 Male, age 51, unknown 9.2
2668 Female, age 75, unknown 9.1
2087 Female, age 72, unknown 8.8
2261 Male, age 18, unknown 7.1
1895 Male, age 76, right hemisphere 5.7
Ventral tegmental area
nTPM: 11.8
2021 Male, age 53, unknown 16.6
1915 Female, age 42, unknown 13.0
2218 Male, age 76, both hemispheres 11.2
2410 Female, age 72, unknown 11.1
1942 Male, age 51, unknown 10.4
2223 Female, age 72, unknown 8.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 40.3
Min nTPM: 2.8
Std nTPM: 7.5
Median nTPM: 13.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 40.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 37.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 37.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 36.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 34.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 30.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 29.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 29.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 27.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 27.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 26.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.7
FF:10158-103A5 76 years, female 66.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.1
Sample A Female 19.1
Sample B Female 20.7
Sample C Male 23.6
Sample D Male 23.0
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 22.6
Min nTPM: 10.5
Sample A Female 22.6
Sample B Female 19.0
Sample C Male 10.5
Sample D Male 11.7
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 27.8
Min nTPM: 18.5
Sample B Female 18.5
Sample C Male 27.8
Sample D Male 20.5
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 14.9
Min nTPM: 7.2
Sample A Female 14.8
Sample B Female 7.2
Sample C Male 10.6
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.4
Sample A Male 3.6
Sample B Male 3.4
Sample C Female 4.6
Sample D Female 4.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69735461 Antisense, RP_050503_02_H05, Mouse strain C57BL/6J (56 days, male) 0.0

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