MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.5 nTPM
HPA Brain:33.8 nTPM
GTEx:62.5 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:23.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
1870 Female, age 42, unknown 34.7
2411 Female, age 72, unknown 33.2
2828 Female, age 72, unknown 32.2
1827 Male, age 72, unknown 31.7
2666 Male, age 74, left hemisphere 30.2
2219 Male, age 76, both hemispheres 28.9
1833 Male, age 53, unknown 28.3
2019 Male, age 18, unknown 27.6
1830 Male, age 51, unknown 27.4
2586 Male, age 75, left hemisphere 21.1
Dorsal raphe nucleus
nTPM: 31.9
2298 Female, age 72, unknown 38.3
2750 Male, age 76, both hemispheres 33.0
2016 Female, age 72, unknown 32.9
1828 Male, age 53, unknown 30.7
2047 Male, age 72, unknown 24.8
Inferior colliculus
nTPM: 29.0
2097 Female, age 72, unknown 32.3
1890 Male, age 53, unknown 29.0
1848 Female, age 42, unknown 28.9
2849 Male, age 72, unknown 25.7
Median raphe nucleus
nTPM: 31.3
2220 Male, age 76, midline 31.3
Periaquaductal grey, anterior
nTPM: 32.1
1947 Male, age 18, unknown 34.7
2502 Female, age 75, unknown 31.7
1795 Male, age 51, unknown 30.1
Periaquaductal grey, dorsal
nTPM: 29.9
2850 Male, age 76, both hemispheres 33.5
1831 Male, age 72, unknown 29.8
1840 Male, age 53, unknown 28.4
2464 Female, age 72, unknown 28.0
Periaquaductal grey, lateral
nTPM: 31.4
2272 Male, age 74, both hemispheres 35.5
2140 Male, age 76, both hemispheres 29.9
2053 Male, age 18, unknown 28.7
Pretectal area
nTPM: 31.9
2273 Male, age 74, both hemispheres 43.5
2667 Female, age 75, unknown 36.5
2224 Female, age 72, unknown 33.4
1817 Female, age 42, unknown 32.5
1944 Female, age 72, unknown 32.0
1816 Male, age 51, unknown 31.2
1815 Male, age 53, unknown 30.9
2316 Male, age 76, right hemisphere 30.5
2825 Male, age 18, unknown 29.6
2007 Male, age 72, unknown 29.4
2407 Male, age 75, both hemispheres 21.6
Red nucleus
nTPM: 31.1
1821 Female, age 72, unknown 37.7
1904 Male, age 53, unknown 36.9
1865 Male, age 51, unknown 34.5
1954 Female, age 42, unknown 34.0
2227 Male, age 72, unknown 33.7
2823 Male, age 76, right hemisphere 33.0
2503 Female, age 72, unknown 32.9
2769 Male, age 72, unknown 32.2
2725 Female, age 75, unknown 28.6
2588 Male, age 74, left hemisphere 27.6
2785 Male, age 18, unknown 27.4
2584 Male, age 75, left hemisphere 14.6
Substantia nigra
nTPM: 33.1
1916 Female, age 42, unknown 43.0
1851 Male, age 51, unknown 37.8
2699 Male, age 18, unknown 37.8
2241 Male, age 72, unknown 34.8
1889 Female, age 72, unknown 32.9
1941 Male, age 53, unknown 30.3
2590 Female, age 75, unknown 30.3
2409 Female, age 72, unknown 30.2
2665 Male, age 74, both hemispheres 29.8
2583 Male, age 75, right hemisphere 23.8
Superior colliculus
nTPM: 30.3
1995 Male, age 72, unknown 34.1
2587 Male, age 74, left hemisphere 34.0
1796 Male, age 53, unknown 33.2
1913 Female, age 42, unknown 32.9
2261 Male, age 18, unknown 32.7
2668 Female, age 75, unknown 30.1
2087 Female, age 72, unknown 29.3
1895 Male, age 76, right hemisphere 27.7
1839 Male, age 51, unknown 26.6
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 33.8
1915 Female, age 42, unknown 36.5
2218 Male, age 76, both hemispheres 36.4
2410 Female, age 72, unknown 34.3
1942 Male, age 51, unknown 33.3
2223 Female, age 72, unknown 31.3
2021 Male, age 53, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.5
Samples: 139

Max nTPM: 137.6
Min nTPM: 35.9
Std nTPM: 15.3
Median nTPM: 60.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 109.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 99.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 95.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 94.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 94.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 91.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 87.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 42.6
Min nTPM: 26.1
Sample A Female 42.6
Sample B Female 34.6
Sample C Male 33.9
Sample D Male 26.1
Midbrain
nTPM: 37.0
Samples: 4

Max nTPM: 44.6
Min nTPM: 28.5
Sample A Female 44.6
Sample B Female 35.9
Sample C Male 38.8
Sample D Male 28.5
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 39.2
Min nTPM: 28.1
Sample B Female 30.3
Sample C Male 39.2
Sample D Male 28.1
Superior colliculi
nTPM: 36.6
Samples: 4

Max nTPM: 41.6
Min nTPM: 32.8
Sample A Female 41.6
Sample B Female 38.3
Sample C Male 32.8
Sample D Male 33.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.3
Sample A Male 26.3
Sample B Male 21.7
Sample C Female 21.3
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68637515 Antisense, RP_050126_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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