HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:7.8 nTPM
HPA Brain:36.7 nTPM
GTEx:7.8 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:9.6 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042980
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Hippocampus
nTPM: 33.3
1911 Female, age 85, right hemisphere 40.2
2148 Female, age 91, left hemisphere 33.7
1855 Male, age 76, left hemisphere 33.0
2529 Female, age 94, left hemisphere 32.4
2621 Female, age 67, right hemisphere 30.7
1898 Male, age 80, left hemisphere 30.1
Dentate gyrus
nTPM: 36.3
1927 Female, age 91, both hemispheres 41.9
2528 Male, age 74, both hemispheres 36.4
2530 Female, age 94, left hemisphere 35.8
2531 Female, age 67, both hemispheres 35.8
2246 Female, age 85, both hemispheres 34.9
2010 Male, age 76, both hemispheres 33.0
Entorhinal gyrus
nTPM: 34.6
2686 Male, age 75, right hemisphere 39.5
2764 Male, age 80, right hemisphere 37.4
2613 Female, age 94, left hemisphere 35.2
1938 Female, age 85, left hemisphere 33.8
1787 Male, age 76, left hemisphere 32.9
2117 Female, age 91, right hemisphere 29.2
Hippocampus, CA1
nTPM: 36.3
2082 Female, age 91, right hemisphere 42.3
2045 Male, age 76, both hemispheres 40.4
1873 Female, age 85, both hemispheres 37.4
2527 Male, age 74, both hemispheres 32.0
2749 Male, age 80, left hemisphere 29.4
Hippocampus, CA2
nTPM: 33.6
2113 Female, age 91, right hemisphere 40.2
1940 Female, age 85, left hemisphere 40.1
2437 Female, age 94, left hemisphere 33.3
2249 Male, age 74, both hemispheres 32.5
1963 Male, age 80, left hemisphere 28.8
1892 Male, age 76, both hemispheres 26.9
Hippocampus, CA3
nTPM: 36.7
2620 Female, age 94, left hemisphere 43.3
2861 Female, age 67, both hemispheres 42.8
1891 Female, age 85, both hemispheres 38.8
2137 Male, age 80, left hemisphere 33.2
2436 Male, age 74, both hemispheres 31.5
1867 Male, age 76, both hemispheres 30.9
Parahippocampal cortex
nTPM: 35.1
2622 Female, age 67, right hemisphere 39.6
2693 Female, age 94, both hemispheres 38.9
2692 Male, age 74, both hemispheres 37.6
2018 Male, age 76, both hemispheres 37.1
1933 Female, age 85, both hemispheres 36.3
2532 Female, age 72, left hemisphere 35.8
1850 Male, age 80, both hemispheres 34.2
1990 Female, age 91, right hemisphere 32.8
2250 Female, age 67, right hemisphere 31.0
2245 Female, age 91, both hemispheres 27.4
Perirhinal gyrus
nTPM: 30.2
2848 Male, age 76, right hemisphere 32.6
1841 Female, age 85, right hemisphere 30.9
1794 Male, age 80, right hemisphere 30.4
1847 Female, age 91, left hemisphere 28.6
2521 Female, age 94, right hemisphere 28.3
Subiculum
nTPM: 34.9
2042 Male, age 76, both hemispheres 41.3
2729 Female, age 91, right hemisphere 39.6
1901 Male, age 80, both hemispheres 34.4
2619 Male, age 74, both hemispheres 33.6
1977 Female, age 85, both hemispheres 31.3
2438 Female, age 94, left hemisphere 29.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.8
Samples: 197

Max nTPM: 25.6
Min nTPM: 1.9
Std nTPM: 2.8
Median nTPM: 7.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 25.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 15.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 14.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 14.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 13.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 12.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 12.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 12.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 12.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 12.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 12.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.8
FF:10153-102I9 76 years, female 17.3
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.1
Pig sample Sample description nTPM
Subiculum
nTPM: 10.6
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.8
Sample A Female 12.8
Sample B Female 9.8
Sample C Male 9.8
Sample D Male 9.9
Dorsal hippocampus
nTPM: 12.1
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.5
Sample A Female 14.1
Sample B Female 11.9
Sample C Male 12.0
Sample D Male 10.5
Entorhinal cortex
nTPM: 10.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.6
Sample A Female 10.0
Sample B Female 12.7
Sample C Male 10.2
Sample D Male 9.6
Ventral hippocampus
nTPM: 10.4
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.0
Sample A Female 11.2
Sample B Female 9.0
Sample C Male 10.0
Sample D Male 11.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.7
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.1
Sample A Male 9.0
Sample B Male 8.1
Sample C Female 9.5
Sample D Female 12.0
Hippocampal formation
nTPM: 9.3
Samples: 4

Max nTPM: 11.2
Min nTPM: 6.9
Sample A Male 11.2
Sample B Male 9.6
Sample C Female 9.3
Sample D Female 6.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
68545705 Antisense, RP_050120_01_D07, Mouse strain C57BL/6J (56 days, male) 0.4
77910816 Antisense, RP_070208_04_G09, Mouse strain C57BL/6J (56 days, male) 0.1

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