MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:24.9 nTPM
GTEx:16.4 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:22.4 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2586 Male, age 75, left hemisphere 30.1
2666 Male, age 74, left hemisphere 27.5
2828 Female, age 72, unknown 25.3
2019 Male, age 18, unknown 25.1
1830 Male, age 51, unknown 24.3
1827 Male, age 72, unknown 24.1
1870 Female, age 42, unknown 24.0
2219 Male, age 76, both hemispheres 23.5
1833 Male, age 53, unknown 23.1
2411 Female, age 72, unknown 21.8
Dorsal raphe nucleus
nTPM: 20.4
2750 Male, age 76, both hemispheres 21.6
2298 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 20.7
1828 Male, age 53, unknown 20.6
2016 Female, age 72, unknown 18.0
Inferior colliculus
nTPM: 21.3
2849 Male, age 72, unknown 21.9
2097 Female, age 72, unknown 21.3
1890 Male, age 53, unknown 21.1
1848 Female, age 42, unknown 20.9
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 20.6
1795 Male, age 51, unknown 21.5
1947 Male, age 18, unknown 20.3
2502 Female, age 75, unknown 20.2
Periaquaductal grey, dorsal
nTPM: 19.5
1831 Male, age 72, unknown 22.0
2464 Female, age 72, unknown 20.4
2850 Male, age 76, both hemispheres 19.4
1840 Male, age 53, unknown 16.3
Periaquaductal grey, lateral
nTPM: 20.3
2272 Male, age 74, both hemispheres 22.0
2140 Male, age 76, both hemispheres 19.9
2053 Male, age 18, unknown 19.1
Pretectal area
nTPM: 23.6
1817 Female, age 42, unknown 26.0
2007 Male, age 72, unknown 25.8
1815 Male, age 53, unknown 25.5
2316 Male, age 76, right hemisphere 25.2
2667 Female, age 75, unknown 24.7
2407 Male, age 75, both hemispheres 24.3
1816 Male, age 51, unknown 23.2
1944 Female, age 72, unknown 22.2
2825 Male, age 18, unknown 21.9
2224 Female, age 72, unknown 20.4
2273 Male, age 74, both hemispheres 20.1
Red nucleus
nTPM: 24.4
2823 Male, age 76, right hemisphere 27.2
1904 Male, age 53, unknown 26.4
2227 Male, age 72, unknown 25.9
2785 Male, age 18, unknown 25.7
2769 Male, age 72, unknown 25.3
1865 Male, age 51, unknown 24.5
2584 Male, age 75, left hemisphere 24.3
2588 Male, age 74, left hemisphere 23.3
2503 Female, age 72, unknown 22.9
1821 Female, age 72, unknown 22.8
1954 Female, age 42, unknown 22.1
2725 Female, age 75, unknown 21.9
Substantia nigra
nTPM: 21.1
2583 Male, age 75, right hemisphere 26.3
2590 Female, age 75, unknown 23.4
2665 Male, age 74, both hemispheres 22.8
1851 Male, age 51, unknown 22.4
2699 Male, age 18, unknown 21.4
1941 Male, age 53, unknown 21.2
1916 Female, age 42, unknown 21.1
1889 Female, age 72, unknown 20.4
2409 Female, age 72, unknown 17.6
2241 Male, age 72, unknown 14.2
Superior colliculus
nTPM: 24.0
1913 Female, age 42, unknown 27.5
2261 Male, age 18, unknown 25.1
1995 Male, age 72, unknown 24.8
1839 Male, age 51, unknown 24.6
1796 Male, age 53, unknown 24.3
2087 Female, age 72, unknown 24.1
2664 Male, age 75, both hemispheres 23.8
2668 Female, age 75, unknown 23.0
1895 Male, age 76, right hemisphere 22.0
2587 Male, age 74, left hemisphere 20.7
Ventral tegmental area
nTPM: 21.4
2223 Female, age 72, unknown 24.0
2021 Male, age 53, unknown 22.3
2218 Male, age 76, both hemispheres 22.3
1915 Female, age 42, unknown 20.7
2410 Female, age 72, unknown 20.4
1942 Male, age 51, unknown 19.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 28.1
Min nTPM: 7.9
Std nTPM: 3.8
Median nTPM: 15.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 28.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 26.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 26.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 25.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 23.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 23.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 23.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.5
Sample A Female 9.5
Sample B Female 8.5
Sample C Male 8.8
Sample D Male 12.4
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.6
Sample A Female 12.5
Sample B Female 7.6
Sample C Male 9.1
Sample D Male 8.0
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 8.9
Min nTPM: 8.2
Sample B Female 8.6
Sample C Male 8.9
Sample D Male 8.2
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.1
Sample A Female 10.6
Sample B Female 10.9
Sample C Male 10.2
Sample D Male 9.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 20.9
Sample A Male 24.2
Sample B Male 20.9
Sample C Female 21.2
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
532670 Antisense, RP_040825_01_C05, Mouse strain C57BL/6J (56 days, male) 3.8

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