MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA Brain:28.9 nTPM
GTEx:56.2 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:57.9 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.6
2019 Male, age 18, unknown 29.8
1870 Female, age 42, unknown 29.2
2411 Female, age 72, unknown 28.7
2586 Male, age 75, left hemisphere 28.2
1827 Male, age 72, unknown 25.9
1833 Male, age 53, unknown 25.9
2666 Male, age 74, left hemisphere 25.8
1830 Male, age 51, unknown 25.4
2828 Female, age 72, unknown 24.5
2219 Male, age 76, both hemispheres 23.0
Dorsal raphe nucleus
nTPM: 25.5
2750 Male, age 76, both hemispheres 26.8
1828 Male, age 53, unknown 25.9
2047 Male, age 72, unknown 25.8
2016 Female, age 72, unknown 25.3
2298 Female, age 72, unknown 23.5
Inferior colliculus
nTPM: 27.8
2097 Female, age 72, unknown 30.3
1848 Female, age 42, unknown 28.5
1890 Male, age 53, unknown 27.3
2849 Male, age 72, unknown 25.0
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Periaquaductal grey, anterior
nTPM: 27.9
2502 Female, age 75, unknown 30.0
1947 Male, age 18, unknown 29.9
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 25.5
1840 Male, age 53, unknown 29.5
2464 Female, age 72, unknown 27.9
1831 Male, age 72, unknown 23.4
2850 Male, age 76, both hemispheres 21.4
Periaquaductal grey, lateral
nTPM: 22.5
2140 Male, age 76, both hemispheres 23.8
2053 Male, age 18, unknown 22.5
2272 Male, age 74, both hemispheres 21.1
Pretectal area
nTPM: 25.7
2007 Male, age 72, unknown 30.4
1817 Female, age 42, unknown 29.9
1815 Male, age 53, unknown 27.7
1816 Male, age 51, unknown 25.9
1944 Female, age 72, unknown 25.8
2667 Female, age 75, unknown 24.8
2273 Male, age 74, both hemispheres 24.4
2407 Male, age 75, both hemispheres 24.4
2825 Male, age 18, unknown 24.0
2316 Male, age 76, right hemisphere 23.9
2224 Female, age 72, unknown 21.8
Red nucleus
nTPM: 28.6
1865 Male, age 51, unknown 31.1
2503 Female, age 72, unknown 31.1
2769 Male, age 72, unknown 29.6
1821 Female, age 72, unknown 29.5
2588 Male, age 74, left hemisphere 29.4
2725 Female, age 75, unknown 29.1
2227 Male, age 72, unknown 28.1
1904 Male, age 53, unknown 28.0
2785 Male, age 18, unknown 27.5
2823 Male, age 76, right hemisphere 26.9
1954 Female, age 42, unknown 26.4
2584 Male, age 75, left hemisphere 26.1
Substantia nigra
nTPM: 28.9
2409 Female, age 72, unknown 34.2
1851 Male, age 51, unknown 31.7
2241 Male, age 72, unknown 31.4
1916 Female, age 42, unknown 31.3
1889 Female, age 72, unknown 28.0
2699 Male, age 18, unknown 27.0
1941 Male, age 53, unknown 26.9
2583 Male, age 75, right hemisphere 26.7
2665 Male, age 74, both hemispheres 26.2
2590 Female, age 75, unknown 25.8
Superior colliculus
nTPM: 26.0
1895 Male, age 76, right hemisphere 30.4
2664 Male, age 75, both hemispheres 27.4
2668 Female, age 75, unknown 27.1
1839 Male, age 51, unknown 27.0
2587 Male, age 74, left hemisphere 25.7
1796 Male, age 53, unknown 25.3
2261 Male, age 18, unknown 25.2
1913 Female, age 42, unknown 24.7
1995 Male, age 72, unknown 23.8
2087 Female, age 72, unknown 23.8
Ventral tegmental area
nTPM: 26.4
2410 Female, age 72, unknown 30.4
1915 Female, age 42, unknown 28.7
2223 Female, age 72, unknown 25.8
1942 Male, age 51, unknown 25.5
2218 Male, age 76, both hemispheres 24.3
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.2
Samples: 139

Max nTPM: 115.2
Min nTPM: 32.8
Std nTPM: 12.6
Median nTPM: 54.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 92.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 87.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 84.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 83.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 83.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 82.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 77.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 74.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 74.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.2
Samples: 4

Max nTPM: 12.5
Min nTPM: 8.6
Sample A Female 12.5
Sample B Female 8.6
Sample C Male 9.5
Sample D Male 10.1
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.7
Sample A Female 12.0
Sample B Female 11.5
Sample C Male 11.8
Sample D Male 10.7
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 11.1
Min nTPM: 9.2
Sample B Female 11.1
Sample C Male 9.2
Sample D Male 9.4
Superior colliculi
nTPM: 11.8
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.7
Sample A Female 12.7
Sample B Female 10.7
Sample C Male 12.2
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.9
Samples: 4

Max nTPM: 60.4
Min nTPM: 56.2
Sample A Male 56.4
Sample B Male 56.2
Sample C Female 58.7
Sample D Female 60.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71281528 Antisense, RP_050818_02_E07, Mouse strain C57BL/6J (56 days, male) 1.8

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