HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:42.2 nTPM
HPA Brain:39.7 nTPM
GTEx:42.2 nTPM
FANTOM5:77.4 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:114.2 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016884
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Hippocampus
nTPM: 37.7
2529 Female, age 94, left hemisphere 41.3
1911 Female, age 85, right hemisphere 39.7
1898 Male, age 80, left hemisphere 38.0
1855 Male, age 76, left hemisphere 37.5
2621 Female, age 67, right hemisphere 36.7
2148 Female, age 91, left hemisphere 32.8
Dentate gyrus
nTPM: 37.9
2528 Male, age 74, both hemispheres 44.9
2010 Male, age 76, both hemispheres 44.0
2530 Female, age 94, left hemisphere 40.9
2246 Female, age 85, both hemispheres 35.7
1927 Female, age 91, both hemispheres 31.6
2531 Female, age 67, both hemispheres 30.2
Entorhinal gyrus
nTPM: 32.9
2117 Female, age 91, right hemisphere 45.9
2764 Male, age 80, right hemisphere 33.3
1787 Male, age 76, left hemisphere 32.8
2686 Male, age 75, right hemisphere 31.9
1938 Female, age 85, left hemisphere 29.7
2613 Female, age 94, left hemisphere 24.0
Hippocampus, CA1
nTPM: 34.8
2527 Male, age 74, both hemispheres 39.3
2082 Female, age 91, right hemisphere 38.6
1873 Female, age 85, both hemispheres 35.9
2749 Male, age 80, left hemisphere 32.9
2045 Male, age 76, both hemispheres 27.5
Hippocampus, CA2
nTPM: 39.7
2249 Male, age 74, both hemispheres 51.8
1940 Female, age 85, left hemisphere 42.2
1963 Male, age 80, left hemisphere 41.1
2113 Female, age 91, right hemisphere 36.9
2437 Female, age 94, left hemisphere 36.2
1892 Male, age 76, both hemispheres 30.3
Hippocampus, CA3
nTPM: 37.4
2436 Male, age 74, both hemispheres 53.7
1891 Female, age 85, both hemispheres 40.4
1867 Male, age 76, both hemispheres 38.9
2620 Female, age 94, left hemisphere 32.5
2861 Female, age 67, both hemispheres 30.4
2137 Male, age 80, left hemisphere 28.7
Parahippocampal cortex
nTPM: 31.9
2018 Male, age 76, both hemispheres 40.9
2250 Female, age 67, right hemisphere 35.9
1990 Female, age 91, right hemisphere 34.8
2692 Male, age 74, both hemispheres 32.7
2532 Female, age 72, left hemisphere 32.2
2245 Female, age 91, both hemispheres 31.7
1850 Male, age 80, both hemispheres 29.3
1933 Female, age 85, both hemispheres 28.3
2622 Female, age 67, right hemisphere 27.3
2693 Female, age 94, both hemispheres 26.0
Perirhinal gyrus
nTPM: 28.0
1794 Male, age 80, right hemisphere 29.8
1841 Female, age 85, right hemisphere 28.7
2848 Male, age 76, right hemisphere 27.9
2521 Female, age 94, right hemisphere 27.4
1847 Female, age 91, left hemisphere 26.4
Subiculum
nTPM: 38.7
2042 Male, age 76, both hemispheres 48.4
1901 Male, age 80, both hemispheres 38.5
2729 Female, age 91, right hemisphere 37.8
1977 Female, age 85, both hemispheres 37.7
2619 Male, age 74, both hemispheres 35.5
2438 Female, age 94, left hemisphere 34.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.2
Samples: 197

Max nTPM: 104.8
Min nTPM: 19.8
Std nTPM: 14.0
Median nTPM: 39.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 104.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 96.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 88.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 80.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 75.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 74.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 71.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 67.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 67.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 66.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 66.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.4
FF:10153-102I9 76 years, female 87.4
FF:10169-103B7 60 years, female 67.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.7
Pig sample Sample description nTPM
Subiculum
nTPM: 53.7
Samples: 4

Max nTPM: 62.8
Min nTPM: 47.7
Sample A Female 62.8
Sample B Female 51.1
Sample C Male 47.7
Sample D Male 53.3
Dorsal hippocampus
nTPM: 60.7
Samples: 4

Max nTPM: 73.9
Min nTPM: 46.6
Sample A Female 73.9
Sample B Female 50.3
Sample C Male 72.0
Sample D Male 46.6
Entorhinal cortex
nTPM: 46.1
Samples: 4

Max nTPM: 52.6
Min nTPM: 39.4
Sample A Female 44.6
Sample B Female 52.6
Sample C Male 47.7
Sample D Male 39.4
Ventral hippocampus
nTPM: 52.5
Samples: 4

Max nTPM: 57.5
Min nTPM: 45.1
Sample A Female 50.8
Sample B Female 45.1
Sample C Male 56.5
Sample D Male 57.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 114.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 101.2
Samples: 4

Max nTPM: 104.3
Min nTPM: 95.5
Sample A Male 103.0
Sample B Male 102.1
Sample C Female 104.3
Sample D Female 95.5
Hippocampal formation
nTPM: 114.3
Samples: 4

Max nTPM: 121.8
Min nTPM: 107.6
Sample A Male 107.6
Sample B Male 113.9
Sample C Female 121.8
Sample D Female 113.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
68637503 Antisense, RP_050126_01_A08, Mouse strain C57BL/6J (56 days, male) 4.7
68499503 Antisense, RP_050118_01_G01, Mouse strain C57BL/6J (56 days, male) 2.3

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